The energy of the whole system in a QMMM simulation
jts2t... at gmail.com
jts2t... at gmail.com
Thu Sep 7 15:05:04 UTC 2017
Thanks for your suggestion, which works well in a example in official
website, but fails in another case.
I run a GEO_OPT simulation using QMMM method, the original motion.inc is
as follows
&MOTION
&GEO_OPT
OPTIMIZER LBFGS
&END
&CONSTRAINT
&FIXED_ATOMS
LIST 1..16
EXCLUDE_MM .TRUE.
EXCLUDE_QM .FALSE.
&END FIXED_ATOMS
&END CONSTRAINT
&END MOTION
Then I added the MD section, they became
&MOTION
&GEO_OPT
OPTIMIZER LBFGS
&END
&CONSTRAINT
&FIXED_ATOMS
LIST 1..16
EXCLUDE_MM .TRUE.
EXCLUDE_QM .FALSE.
&END FIXED_ATOMS
&END CONSTRAINT
&MD
&PRINT
&ENERGY
FILENAME=total.ener
&EACH
GEO_OPT 1
&END EACH
&END ENERGY
&END PRINT
&END MD
&END MOTION
The strange thing is that there wasn't any file named *total.ener* in the
current directory. Where is the question ?
The &EACH section is not correct ?
Expect for your kind reply !
在 2017年9月7日星期四 UTC+8下午12:13:16,Jadzia写道:
>
> Hello,
>
> To my understanding if you want to write the total energy to a file for
> instance for an MD simulation you need to add a section similar to:
>
> &MOTION
> &MD
> &PRINT
> &ENERGY
> FILENAME =cp2k.out.energy
> &EACH
> MD 10
> &END EACH
> &END ENERGY
> &END PRINT
> &END MD
> &END MOTION
>
> In this example the energy of every tenth step is written to the file, and
> is independent of the type of force evaluation (MM, QM, QM/MM, ...).
>
> Here is the corresponding section in the manual:
> https://manual.cp2k.org/trunk/CP2K_INPUT/MOTION/MD/PRINT/ENERGY/EACH.html
>
> Hope this helps,
> Jadzia
>
>
>
>
>
> On Wednesday, September 6, 2017 at 8:31:10 AM UTC+2, jts2... at gmail.com
> wrote:
>>
>> Dear researchers and developers,
>>
>> I am not so familiar with CP2K. After I run a QMMM simulation of KCl just
>> as here: https://www.cp2k.org/exercises:2017_ethz_mmm:qmmm, I want to
>> know the energy of the whole system not just the energy of the QM region,
>> how to achieve it in the input setting?
>>
>> I'll appreciate for your apply !
>>
>
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