setting grotthus mechasism visualization using vmd

Dj MG ghada... at gmail.com
Tue Jul 19 15:59:10 UTC 2016


OK MY PROBLEM HAVE SOLVED THANK YOU

On Tuesday, July 19, 2016 at 8:45:51 PM UTC+7, Dj MG wrote:
>
> Hello cp2k lovers.
> How's the setting grotthus mechasism visualization using vmd?
> My aim is looking hop-turn of proton. 
> I have run aimd in cp2k and the output file including file.ener, file.xyz. 
>
> When i visualize file.xyz (using CPK model) in vmd no the hop-turn just 
> vibration of atom.
> But when i change atom model to Dynamic Bond the hop-turn was appeared.
> And i have watched a lot of  hop-turn proton videos in Youtube, they use 
> CPK model and the hop-turn proton appear.
> Then i search in google about hop-turn mechanism in vmd, they use 
> tk-console. But when i using it's confusing for me.
> I ask again what's the important file extention to built hop-turn 
> mechanism?
> Any advice/suggest for me? 
>
> Thank you
> DJ MG
> Cheers Always
>
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