[CP2K:5813] Compiling with hwloc
Vedran Miletić
riv... at gmail.com
Tue Nov 11 21:04:47 UTC 2014
Hello again,
patch at [1] is not the cleanest solution, but it fixes the build problem.
To fix it in a nicer way, all functions and subroutines in the file should
be restructured in style of those that are already public. I propose we go
with [1] for now and fix it in a cleaner way at later point.
Regards,
Vedran
[1]
https://bitbucket.org/infuniri/cp2k-doc-fixes/commits/6f6b40fa7fe411a4dee87dc8cf5706584ff1c7b9
Dana utorak, 11. studenoga 2014. 10:55:13 UTC+1, korisnik Vedran Miletić
napisao je:
>
> This seems to break non-hwloc build. Let me come up with a better patch
> later today.
>
> Regards,
> Vedran
>
> Dana utorak, 11. studenoga 2014. 09:18:25 UTC+1, korisnik Vedran Miletić
> napisao je:
>>
>> Hello Ole, Christiane,
>>
>> I tried it again after Ole's patch, and I got it to compile after minor
>> changes [1]. Upon running, I get:
>>
>> $ ./cp2k.popt
>>
>> ERROR: At least one command line argument must be specified
>>
>> Program received signal SIGFPE: Floating-point exception - erroneous
>> arithmetic operation.
>>
>> Backtrace for this error:
>> #0 0x7FBF63E31407
>> #1 0x7FBF63E31A1E
>> #2 0x7FBF6333D17F
>> #3 0x1C4770E in hw_topology_init at ma_hwloc.c:161
>> #4 0x1C38AF8 in __machine_architecture_MOD_ma_init_machine at
>> machine_architecture.F:558
>> #5 0xA1E0D1 in __cp_ma_interface_MOD_cp_ma_init_lib at
>> cp_ma_interface.F:872
>> #6 0x783DDE in __f77_interface_MOD_init_cp2k at f77_interface.F:289
>> #7 0x408E4A in cp2k at cp2k.F:225
>> Floating point exception
>>
>> I will take a look what is going on later today to see if this is just an
>> issue on my side or a bug somewhere. Thanks for your help.
>>
>> Regards,
>> Vedran
>>
>> [1]
>> https://bitbucket.org/infuniri/cp2k-doc-fixes/commits/64d9b6cf75a057fe9e1cd55325112900036b7655
>>
>> Dana četvrtak, 6. studenoga 2014. 15:23:21 UTC+1, korisnik Ole Schütt
>> napisao je:
>>>
>>> Hi Vedran,
>>>
>>> the compilation problems are cause by missing USE-statements. I just committed a fix to svn.
>>> Btw, the HWTOPO flag got removed from the Makefile. Things should work without it.
>>>
>>> -Ole
>>>
>>>
>>> On Thursday, November 6, 2014 11:48:25 AM UTC+1, Vedran Miletić wrote:
>>>>
>>>> Hello Christiane,
>>>>
>>>> thank you for your response. I tried this approach, but unfortunately I
>>>> get the same error. Do you have any other idea I can try?
>>>>
>>>> Regards,
>>>> Vedran
>>>>
>>>> Dana srijeda, 5. studenoga 2014. 08:03:03 UTC+1, korisnik Christiane
>>>> Pousa Ribeiro napisao je:
>>>>>
>>>>> Dear Vedran,
>>>>>
>>>>> Could you please add the line bellow to your arch file and give a try?
>>>>>
>>>>> HWTOPO = yes
>>>>>
>>>>> You should include too the -I/usr/include/hwloc.
>>>>>
>>>>> Best regards,
>>>>>
>>>>>
>>>>>
>>>>> On Tue, Nov 4, 2014 at 10:34 PM, Vedran Miletić <riv... at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> I'm trying to compile CP2K with hwloc support enabled. I'm using
>>>>>> Debian testing with gfortran 4.9. My arch file is:
>>>>>>
>>>>>> CC = mpicc
>>>>>> CPP =
>>>>>> FC = mpif90
>>>>>> LD = gfortran
>>>>>> AR = ar -r
>>>>>>
>>>>>> DFLAGS = -D__GFORTRAN -D__parallel -D__HWLOC -D__FFTSG -D__FFTW3
>>>>>> -D__LIBINT -D__LIBXC2 -D__BLACS -D__SCALAPACK -D__ELPA
>>>>>> CPPFLAGS = -C -traditional $(DFLAGS)
>>>>>> FCFLAGS = -g -Wall -O3 -ffast-math -funroll-loops -ftree-vectorize
>>>>>> -ffree-form -ffree-line-length-none $(DFLAGS) -I/usr/include/elpa/modules
>>>>>> LDFLAGS = $(FCFLAGS)
>>>>>> LIBS = -llapack -lblas -lfftw3 -lint -lderiv -lxc -lhwloc -lmpi
>>>>>> -lmpif90 -lmpif77 -lblacsCinit-openmpi -lblacs-openmpi -lscalapack-openmpi
>>>>>> -lelpa
>>>>>>
>>>>>> Upon compiling, I get:
>>>>>>
>>>>>> cardId = ma_get_netDev(my_info%core, my_info%mp_info%myproc)
>>>>>> 1
>>>>>> Error: Function 'ma_get_netdev' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:1041.8:
>>>>>>
>>>>>> IF ( ma_get_nnetDev(node) .GT. 0 ) THEN
>>>>>> 1
>>>>>> Error: Function 'ma_get_nnetdev' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:1044.12:
>>>>>>
>>>>>> node = ma_get_node_netDev()
>>>>>> 1
>>>>>> Error: Function 'ma_get_node_netdev' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:937.39:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:744.14:
>>>>>>
>>>>>> my_node = ma_get_core_node(my_core)
>>>>>> 1
>>>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:693.41:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:628.41:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> mpif90 -c -g -Wall -O3 -ffast-math -funroll-loops -ftree-vectorize
>>>>>> -ffree-form -ffree-line-length-none -D__GFORTRAN -D__parallel -D__HWLOC
>>>>>> -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBXC2 -D__BLACS -D__SCALAPACK -D__ELPA
>>>>>> -I/usr/lib/openmpi/include/openmpi/opal/mca/hwloc/
>>>>>> -I/usr/include/elpa/modules
>>>>>> -D__COMPILE_ARCH="\"Linux-x86-64-debian-gfortran\"" -D__COMPILE_DATE="\"Uto
>>>>>> Stu 4 22:28:09 CET 2014\"" -D__COMPILE_HOST="\"akston\""
>>>>>> -D__COMPILE_REVISION="\"git:eb7b195\"" -D__SHORT_FILE__="\"cp_files.F\""
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/common/cp_files.F
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:528.38:
>>>>>>
>>>>>> my_info%threads_info(id+1)%node = ma_get_core_node(core)
>>>>>> 1
>>>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:530.41:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:454.41:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:376.41:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:316.39:
>>>>>>
>>>>>> my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>> 1
>>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:321.33:
>>>>>>
>>>>>> my_info%threads_info(1)%node = ma_get_core_node(core)
>>>>>> 1
>>>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>>>
>>>>>> I tried adding -I/usr/include/hwloc and
>>>>>> -I/usr/lib/openmpi/include/openmpi/opal/mca/hwloc but it made no change.
>>>>>> Any ideas?
>>>>>>
>>>>>> Regards,
>>>>>> Vedran Miletić
>>>>>>
>>>>>> --
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>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> []'s
>>>>> Christiane Pousa Ribeiro
>>>>>
>>>>> "Judge a man by his questions, rather than by his answers"
>>>>>
>>>>
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