[CP2K:5813] Compiling with hwloc

Vedran Miletić riv... at gmail.com
Tue Nov 11 10:55:13 CET 2014


This seems to break non-hwloc build. Let me come up with a better patch 
later today.

Regards,
Vedran

Dana utorak, 11. studenoga 2014. 09:18:25 UTC+1, korisnik Vedran Miletić 
napisao je:
>
> Hello Ole, Christiane,
>
> I tried it again after Ole's patch, and I got it to compile after minor 
> changes [1]. Upon running, I get:
>
> $ ./cp2k.popt
>
>  ERROR: At least one command line argument must be specified
>
> Program received signal SIGFPE: Floating-point exception - erroneous 
> arithmetic operation.
>
> Backtrace for this error:
> #0  0x7FBF63E31407
> #1  0x7FBF63E31A1E
> #2  0x7FBF6333D17F
> #3  0x1C4770E in hw_topology_init at ma_hwloc.c:161
> #4  0x1C38AF8 in __machine_architecture_MOD_ma_init_machine at 
> machine_architecture.F:558
> #5  0xA1E0D1 in __cp_ma_interface_MOD_cp_ma_init_lib at 
> cp_ma_interface.F:872
> #6  0x783DDE in __f77_interface_MOD_init_cp2k at f77_interface.F:289
> #7  0x408E4A in cp2k at cp2k.F:225
> Floating point exception
>
> I will take a look what is going on later today to see if this is just an 
> issue on my side or a bug somewhere. Thanks for your help.
>
> Regards,
> Vedran
>
> [1] 
> https://bitbucket.org/infuniri/cp2k-doc-fixes/commits/64d9b6cf75a057fe9e1cd55325112900036b7655
>
> Dana četvrtak, 6. studenoga 2014. 15:23:21 UTC+1, korisnik Ole Schütt 
> napisao je:
>>
>> Hi Vedran,
>>
>> the compilation problems are cause by missing USE-statements. I just committed a fix to svn.
>> Btw, the HWTOPO flag got removed from the Makefile. Things should work without it.
>>
>> -Ole
>>
>>
>> On Thursday, November 6, 2014 11:48:25 AM UTC+1, Vedran Miletić wrote:
>>>
>>> Hello Christiane,
>>>
>>> thank you for your response. I tried this approach, but unfortunately I 
>>> get the same error. Do you have any other idea I can try?
>>>
>>> Regards,
>>> Vedran
>>>
>>> Dana srijeda, 5. studenoga 2014. 08:03:03 UTC+1, korisnik Christiane 
>>> Pousa Ribeiro napisao je:
>>>>
>>>> Dear Vedran,
>>>>
>>>> Could you please add the line bellow to your arch file and give a try?
>>>>
>>>> HWTOPO   = yes
>>>>
>>>> You should include too the -I/usr/include/hwloc.
>>>>
>>>> Best regards, 
>>>>
>>>>
>>>>
>>>> On Tue, Nov 4, 2014 at 10:34 PM, Vedran Miletić <riv... at gmail.com> 
>>>> wrote:
>>>>
>>>>> Hello,
>>>>>
>>>>> I'm trying to compile CP2K with hwloc support enabled. I'm using 
>>>>> Debian testing with gfortran 4.9. My arch file is:
>>>>>
>>>>> CC       = mpicc
>>>>> CPP      =
>>>>> FC       = mpif90
>>>>> LD       = gfortran
>>>>> AR       = ar -r
>>>>>
>>>>> DFLAGS   = -D__GFORTRAN -D__parallel -D__HWLOC -D__FFTSG -D__FFTW3 
>>>>> -D__LIBINT -D__LIBXC2 -D__BLACS -D__SCALAPACK -D__ELPA
>>>>> CPPFLAGS = -C -traditional $(DFLAGS)
>>>>> FCFLAGS  = -g -Wall -O3 -ffast-math -funroll-loops -ftree-vectorize 
>>>>> -ffree-form -ffree-line-length-none $(DFLAGS) -I/usr/include/elpa/modules
>>>>> LDFLAGS  = $(FCFLAGS) 
>>>>> LIBS     = -llapack -lblas -lfftw3 -lint -lderiv -lxc -lhwloc -lmpi 
>>>>> -lmpif90 -lmpif77 -lblacsCinit-openmpi -lblacs-openmpi -lscalapack-openmpi 
>>>>> -lelpa
>>>>>
>>>>> Upon compiling, I get:
>>>>>
>>>>>      cardId = ma_get_netDev(my_info%core, my_info%mp_info%myproc)
>>>>>               1
>>>>> Error: Function 'ma_get_netdev' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:1041.8:
>>>>>
>>>>>    IF ( ma_get_nnetDev(node) .GT. 0 ) THEN
>>>>>         1
>>>>> Error: Function 'ma_get_nnetdev' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:1044.12:
>>>>>
>>>>>      node = ma_get_node_netDev()
>>>>>             1
>>>>> Error: Function 'ma_get_node_netdev' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:937.39:
>>>>>
>>>>>   my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                        1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:744.14:
>>>>>
>>>>>     my_node = ma_get_core_node(my_core)
>>>>>               1
>>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:693.41:
>>>>>
>>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                          1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:628.41:
>>>>>
>>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                          1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> mpif90 -c -g -Wall -O3 -ffast-math -funroll-loops -ftree-vectorize 
>>>>> -ffree-form -ffree-line-length-none -D__GFORTRAN -D__parallel -D__HWLOC 
>>>>> -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBXC2 -D__BLACS -D__SCALAPACK -D__ELPA 
>>>>> -I/usr/lib/openmpi/include/openmpi/opal/mca/hwloc/ 
>>>>> -I/usr/include/elpa/modules 
>>>>> -D__COMPILE_ARCH="\"Linux-x86-64-debian-gfortran\"" -D__COMPILE_DATE="\"Uto 
>>>>> Stu  4 22:28:09 CET 2014\"" -D__COMPILE_HOST="\"akston\"" 
>>>>> -D__COMPILE_REVISION="\"git:eb7b195\"" -D__SHORT_FILE__="\"cp_files.F\"" 
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/common/cp_files.F 
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:528.38:
>>>>>
>>>>>     my_info%threads_info(id+1)%node = ma_get_core_node(core)
>>>>>                                       1
>>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:530.41:
>>>>>
>>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                          1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:454.41:
>>>>>
>>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                          1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:376.41:
>>>>>
>>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                          1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:316.39:
>>>>>
>>>>>   my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>>                                        1
>>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:321.33:
>>>>>
>>>>>   my_info%threads_info(1)%node = ma_get_core_node(core)
>>>>>                                  1
>>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>>
>>>>> I tried adding -I/usr/include/hwloc and 
>>>>> -I/usr/lib/openmpi/include/openmpi/opal/mca/hwloc but it made no change. 
>>>>> Any ideas?
>>>>>
>>>>> Regards,
>>>>> Vedran Miletić
>>>>>
>>>>> -- 
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>>>>>
>>>>
>>>>
>>>>
>>>> -- 
>>>> []'s
>>>> Christiane Pousa Ribeiro
>>>>  
>>>> "Judge a man by his questions, rather than by his answers" 
>>>>  
>>>
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