[CP2K:5813] Compiling with hwloc

Vedran Miletić riv... at gmail.com
Tue Nov 11 08:18:25 UTC 2014
Previous message (by thread): [CP2K:5813] Compiling with hwloc
Next message (by thread): [CP2K:5813] Compiling with hwloc
Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
Hello Ole, Christiane,

I tried it again after Ole's patch, and I got it to compile after minor 
changes [1]. Upon running, I get:

$ ./cp2k.popt

 ERROR: At least one command line argument must be specified

Program received signal SIGFPE: Floating-point exception - erroneous 
arithmetic operation.

Backtrace for this error:
#0  0x7FBF63E31407
#1  0x7FBF63E31A1E
#2  0x7FBF6333D17F
#3  0x1C4770E in hw_topology_init at ma_hwloc.c:161
#4  0x1C38AF8 in __machine_architecture_MOD_ma_init_machine at 
machine_architecture.F:558
#5  0xA1E0D1 in __cp_ma_interface_MOD_cp_ma_init_lib at 
cp_ma_interface.F:872
#6  0x783DDE in __f77_interface_MOD_init_cp2k at f77_interface.F:289
#7  0x408E4A in cp2k at cp2k.F:225
Floating point exception

I will take a look what is going on later today to see if this is just an 
issue on my side or a bug somewhere. Thanks for your help.

Regards,
Vedran

[1] 
https://bitbucket.org/infuniri/cp2k-doc-fixes/commits/64d9b6cf75a057fe9e1cd55325112900036b7655

Dana četvrtak, 6. studenoga 2014. 15:23:21 UTC+1, korisnik Ole Schütt 
napisao je:
>
> Hi Vedran,
>
> the compilation problems are cause by missing USE-statements. I just committed a fix to svn.
> Btw, the HWTOPO flag got removed from the Makefile. Things should work without it.
>
> -Ole
>
>
> On Thursday, November 6, 2014 11:48:25 AM UTC+1, Vedran Miletić wrote:
>>
>> Hello Christiane,
>>
>> thank you for your response. I tried this approach, but unfortunately I 
>> get the same error. Do you have any other idea I can try?
>>
>> Regards,
>> Vedran
>>
>> Dana srijeda, 5. studenoga 2014. 08:03:03 UTC+1, korisnik Christiane 
>> Pousa Ribeiro napisao je:
>>>
>>> Dear Vedran,
>>>
>>> Could you please add the line bellow to your arch file and give a try?
>>>
>>> HWTOPO   = yes
>>>
>>> You should include too the -I/usr/include/hwloc.
>>>
>>> Best regards, 
>>>
>>>
>>>
>>> On Tue, Nov 4, 2014 at 10:34 PM, Vedran Miletić <riv... at gmail.com> 
>>> wrote:
>>>
>>>> Hello,
>>>>
>>>> I'm trying to compile CP2K with hwloc support enabled. I'm using Debian 
>>>> testing with gfortran 4.9. My arch file is:
>>>>
>>>> CC       = mpicc
>>>> CPP      =
>>>> FC       = mpif90
>>>> LD       = gfortran
>>>> AR       = ar -r
>>>>
>>>> DFLAGS   = -D__GFORTRAN -D__parallel -D__HWLOC -D__FFTSG -D__FFTW3 
>>>> -D__LIBINT -D__LIBXC2 -D__BLACS -D__SCALAPACK -D__ELPA
>>>> CPPFLAGS = -C -traditional $(DFLAGS)
>>>> FCFLAGS  = -g -Wall -O3 -ffast-math -funroll-loops -ftree-vectorize 
>>>> -ffree-form -ffree-line-length-none $(DFLAGS) -I/usr/include/elpa/modules
>>>> LDFLAGS  = $(FCFLAGS) 
>>>> LIBS     = -llapack -lblas -lfftw3 -lint -lderiv -lxc -lhwloc -lmpi 
>>>> -lmpif90 -lmpif77 -lblacsCinit-openmpi -lblacs-openmpi -lscalapack-openmpi 
>>>> -lelpa
>>>>
>>>> Upon compiling, I get:
>>>>
>>>>      cardId = ma_get_netDev(my_info%core, my_info%mp_info%myproc)
>>>>               1
>>>> Error: Function 'ma_get_netdev' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:1041.8:
>>>>
>>>>    IF ( ma_get_nnetDev(node) .GT. 0 ) THEN
>>>>         1
>>>> Error: Function 'ma_get_nnetdev' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:1044.12:
>>>>
>>>>      node = ma_get_node_netDev()
>>>>             1
>>>> Error: Function 'ma_get_node_netdev' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:937.39:
>>>>
>>>>   my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                        1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:744.14:
>>>>
>>>>     my_node = ma_get_core_node(my_core)
>>>>               1
>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:693.41:
>>>>
>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                          1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:628.41:
>>>>
>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                          1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> mpif90 -c -g -Wall -O3 -ffast-math -funroll-loops -ftree-vectorize 
>>>> -ffree-form -ffree-line-length-none -D__GFORTRAN -D__parallel -D__HWLOC 
>>>> -D__FFTSG -D__FFTW3 -D__LIBINT -D__LIBXC2 -D__BLACS -D__SCALAPACK -D__ELPA 
>>>> -I/usr/lib/openmpi/include/openmpi/opal/mca/hwloc/ 
>>>> -I/usr/include/elpa/modules 
>>>> -D__COMPILE_ARCH="\"Linux-x86-64-debian-gfortran\"" -D__COMPILE_DATE="\"Uto 
>>>> Stu  4 22:28:09 CET 2014\"" -D__COMPILE_HOST="\"akston\"" 
>>>> -D__COMPILE_REVISION="\"git:eb7b195\"" -D__SHORT_FILE__="\"cp_files.F\"" 
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/common/cp_files.F 
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:528.38:
>>>>
>>>>     my_info%threads_info(id+1)%node = ma_get_core_node(core)
>>>>                                       1
>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:530.41:
>>>>
>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                          1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:454.41:
>>>>
>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                          1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:376.41:
>>>>
>>>>     my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                          1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:316.39:
>>>>
>>>>   my_info%threads_info(id+1)%id_real = ma_get_thread_id()
>>>>                                        1
>>>> Error: Function 'ma_get_thread_id' at (1) has no IMPLICIT type
>>>> /home/vedranm/workspace/cp2k.git/cp2k/src/ma/ma_affinity.F:321.33:
>>>>
>>>>   my_info%threads_info(1)%node = ma_get_core_node(core)
>>>>                                  1
>>>> Error: Function 'ma_get_core_node' at (1) has no IMPLICIT type
>>>>
>>>> I tried adding -I/usr/include/hwloc and 
>>>> -I/usr/lib/openmpi/include/openmpi/opal/mca/hwloc but it made no change. 
>>>> Any ideas?
>>>>
>>>> Regards,
>>>> Vedran Miletić
>>>>
>>>> -- 
>>>> You received this message because you are subscribed to the Google 
>>>> Groups "cp2k" group.
>>>> To unsubscribe from this group and stop receiving emails from it, send 
>>>> an email to cp2k+... at googlegroups.com.
>>>> To post to this group, send email to cp... at googlegroups.com.
>>>> Visit this group at http://groups.google.com/group/cp2k.
>>>> For more options, visit https://groups.google.com/d/optout.
>>>>
>>>
>>>
>>>
>>> -- 
>>> []'s
>>> Christiane Pousa Ribeiro
>>>  
>>> "Judge a man by his questions, rather than by his answers" 
>>>  
>>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20141111/7b8daf1b/attachment.htm>
Previous message (by thread): [CP2K:5813] Compiling with hwloc
Next message (by thread): [CP2K:5813] Compiling with hwloc
Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]
More information about the CP2K-user mailing list