[CP2K-user] [CP2K:21390] How to restrain multiple H-bond during metadynamics simulation in CP2K ?
bijaya pathak
bijayapathak85 at gmail.com
Thu Apr 17 17:26:07 UTC 2025
Dear all,
I'm trying to do metadynamics simulation in a system, where I need to
restrain multiple H-bonds. I came across the constraining colvar
subsection.
My input file looks like follows:
&COLVAR 1
&DISTANCE
ATOMS 2 60
&END DISTANCE
&END COLVAR
&COLVAR 2
&COORDINATION
ATOMS_FROM 2
ATOMS_TO 70 68
R_0 0.8
NN 6
ND 12
&END COORDINATION
&END COLVAR
&COLVAR 3
&COORDINATION
ATOMS_FROM 61
ATOMS_TO 8
R_0 0.8
NN 6
ND 12
&END COORDINATION
&END COLVAR
&COLVAR 4
&COORDINATION
ATOMS_FROM 58
ATOMS_TO 3
R_0 0.8
NN 6
ND 12
&END COORDINATION
&END COLVAR
&COLVAR 5
&COORDINATION
ATOMS_FROM 59
ATOMS_TO 4
R_0 0.8
NN 6
ND 12
&END COORDINATION
&END COLVAR
&COLVAR 6
&COORDINATION
ATOMS_FROM 1
ATOMS_TO 66
R_0 0.8
NN 6
ND 12
&END COORDINATION
&END COLVAR
&COLVAR 7
&ANGLE
ATOMS 2 60 1
&END ANGLE
&END COLVAR
&CONSTRAINT
&COLLECTIVE
COLVAR 2
TARGET 0.8
INTERMOLECULAR T
&RESTRAINT
K 10
&END RESTRAINT
&END COLLECTIVE
&COLLECTIVE
COLVAR 3
TARGET 0.8
INTERMOLECULAR T
&RESTRAINT
K 10
&END RESTRAINT
&END COLLECTIVE
&COLLECTIVE
COLVAR 4
TARGET 0.8
INTERMOLECULAR T
&RESTRAINT
K 10
&END RESTRAINT
&END COLLECTIVE
&COLLECTIVE
COLVAR 5
TARGET 0.8
INTERMOLECULAR T
&RESTRAINT
K 10
&END RESTRAINT
&END COLLECTIVE
&COLLECTIVE
COLVAR 6
TARGET 0.8
INTERMOLECULAR T
&RESTRAINT
K 10
&END RESTRAINT
&END COLLECTIVE
&COLLECTIVE
COLVAR 7
TARGET [deg] 170
INTERMOLECULAR T
&RESTRAINT
K 10
&END RESTRAINT
&END COLLECTIVE
&END CONSTRAINT
But with small value of force constant, the restrain does not work and when
I increase the value, the molecules break apart.
Is there any alternative way to do it ? what am I doing wrong ? Any
suggestion is appreciated .
Sincerely
Bijaya
--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+unsubscribe at googlegroups.com.
To view this discussion visit https://groups.google.com/d/msgid/cp2k/db40d32a-34d6-4e27-8d7c-0967859c6313n%40googlegroups.com.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20250417/e0992f48/attachment-0001.htm>
More information about the CP2K-user
mailing list