[CP2K-user] [CP2K:20329] Dipole Calculation Freezing
Sam Varner
varner.s9 at gmail.com
Fri Jun 14 23:55:21 UTC 2024
Hello,
I am trying to loop over a set of frames and calculate the molecular
dipoles. I am using reftraj to go over the frames, and the LOCALIZE method
to calculate the molecular dipoles.
I am running into an issue where it randomly freezes after computing a
number of frames (sometimes 30, sometimes 80, sometimes 100). I am not sure
why this is happening, and there is no error output. The calculation does
not abort, it just freezes and won't continue. The freeze happens right
before the fermi energy is printed and the LOCALIZE section is printed.
I have also tried using the ASE cp2k calculator with cp2k_shell.psmp, but
that had the same issue. The freezing does not occur when I do not
calculate the dipoles, so the issue must be tied to that.
Here is an example input script with relevant information included:
&GLOBAL
EXTENDED_FFT_LENGTHS T
PROJECT cp2k
RUN_TYPE MD
&END GLOBAL
&MOTION
&MD
ENSEMBLE REFTRAJ
STEPS 1000
&REFTRAJ
TRAJ_FILE_NAME input.xyz
EVAL_ENERGY_FORCES T
&END REFTRAJ
&END MD
&END MOTION
&FORCE_EVAL
METHOD Quickstep
&DFT
BASIS_SET_FILE_NAME BASIS_FILE
POTENTIAL_FILE_NAME POTENTIAL_FILE
&LOCALIZE
&PRINT
&MOLECULAR_DIPOLES
PERIODIC T
REF COM
FILENAME ./dipoles/dipole
&EACH
QS_SCF 1
&END EACH
&END MOLECULAR_DIPOLES
&END PRINT
&END LOCALIZE
&QS
METHOD GPW
EXTRAPOLATION PS
EXTRAPOLATION_ORDER 3
EPS_DEFAULT 1.0E-12
&END QS
&POISSON
PERIODIC XYZ
&END POISSON
&SCF
EPS_SCF 1.0E-6
SCF_GUESS ATOMIC
MAX_SCF 30
&OT T
MINIMIZER DIIS
PRECONDITIONER FULL_SINGLE_INVERSE
&END OT
&OUTER_SCF
TYPE NONE
EPS_SCF 1.E-6
MAX_SCF 10
&END OUTER_SCF
&END SCF
&XC
&XC_FUNCTIONAL
...
&END XC_FUNCTIONAL
&VDW_POTENTIAL
...
&END VDW_POTENTIAL
&END XC
&LS_SCF
MAX_SCF 50
&END LS_SCF
&MGRID
CUTOFF 800
&END MGRID
&END DFT
&SUBSYS
&TOPOLOGY
&GENERATE
BONDLENGTH_MAX 1.15
BONDLENGTH_MIN 0.85
BONDPARM VDW
CREATE_MOLECULES T
&END GENERATE
&MOL_SET
&MOLECULE
CONNECTIVITY GENERATE
NMOL 215
&END MOLECULE
&END MOL_SET
&END TOPOLOGY
&KIND H
...
&END KIND
&KIND O
...
&END KIND
&COORD
...
&END COORD
&CELL
PERIODIC XYZ
...
&END CELL
&END SUBSYS
&END FORCE_EVAL
Any help would be greatly appreciated! Thank you so much in advance!
Best,
Sam
--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+unsubscribe at googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cp2k/a324f85c-bfc3-4177-914b-0d611ad8cf8an%40googlegroups.com.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20240614/c7e2989f/attachment.htm>
More information about the CP2K-user
mailing list