[CP2K-user] [CP2K:20457] AIMD on Na surface
sreehari B R
brsreehari at gmail.com
Wed Jul 17 00:45:47 UTC 2024
Hello everyone,
I am studying the reduction mechanism of my anion on a Na surface using
CP2K. However, I am encountering an issue where no reduction occurs on the
Na surface, while the same setup shows anion reduction on a Li surface. The
CP2K simulation does not produce any errors, making it challenging to
diagnose the problem.
My workflow involves:
1. Minimization using LAMMPS
2. Geometry optimization
3. AIMD
I have attached my AIMD script for reference. Could someone please help me
identify what might be causing the lack of anion reduction on the Na
surface? Any insights or suggestions would be greatly appreciated.
Thank you in advance for your assistance!
AIMD input file:
&GLOBAL
PROJECT 100_IL
RUN_TYPE MD
IOLEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD QS
&DFT
BASIS_SET_FILE_NAME ./BASIS_MOLOPT
POTENTIAL_FILE_NAME ./GTH_POTENTIALS
CHARGE 0
LSD
&QS
EPS_DEFAULT 1.0E-10
&END QS
&MGRID
CUTOFF 600
NGRIDS 4
REL_CUTOFF 60
&END MGRID
&SCF
SCF_GUESS ATOMIC
MAX_SCF 200
EPS_SCF 1.0E-4
&OT
PRECONDITIONER FULL_SINGLE_INVERSE
MINIMIZER DIIS
&END OT
&OUTER_SCF
MAX_SCF 200
EPS_SCF 1.0E-4
&END OUTER_SCF
&PRINT
&RESTART OFF
&END
&END PRINT
&END SCF
&XC
&XC_FUNCTIONAL PBE
&END XC_FUNCTIONAL
&VDW_POTENTIAL
POTENTIAL_TYPE PAIR_POTENTIAL
&PAIR_POTENTIAL
PARAMETER_FILE_NAME dftd3.dat
TYPE DFTD3
REFERENCE_FUNCTIONAL PBE
R_CUTOFF [angstrom] 16
&END PAIR_POTENTIAL
&END VDW_POTENTIAL
&END XC
&END DFT
&SUBSYS
&CELL
ABC [angstrom] 12.5000 12.5000 30.000
&END CELL
&TOPOLOGY
COORD_FILE_NAME EM_TFSI-pos-1.xyz
COORD_FILE_FORMAT XYZ
&END TOPOLOGY
&KIND H
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q1
&END KIND
&KIND F
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q7
&END KIND
&KIND O
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND C
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q4
&END KIND
&KIND S
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND N
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q5
&END KIND
&KIND Si
BASIS_SET TZVP-MOLOPT-GTH
POTENTIAL GTH-PBE-q4
&END KIND
&KIND Na
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q9
&END KIND
&END SUBSYS
&END FORCE_EVAL
&MOTION
&GEO_OPT
OPTIMIZER LBFGS
MAX_ITER 100
MAX_DR [bohr] 0.003
&BFGS
&END BFGS
&END GEO_OPT
&MD
ENSEMBLE NVT
TEMPERATURE [K] 350
TIMESTEP [fs] 1
STEPS 30000
&THERMOSTAT
TYPE NOSE
&NOSE
TIMECON 50
&END NOSE
&END THERMOSTAT
&END MD
&PRINT
&TRAJECTORY
&EACH
MD 1
&END EACH
&END TRAJECTORY
&VELOCITIES OFF
&END VELOCITIES
&FORCES OFF
&END FORCES
&RESTART_HISTORY
&EACH
MD 5000
&END EACH
&END RESTART_HISTORY
&RESTART
BACKUP_COPIES 2
&EACH
MD 1
&END EACH
&END RESTART
&END PRINT
&CONSTRAINT
&FIXED_ATOMS
COMPONENTS_TO_FIX XYZ
LIST 1 19 37 7 25 43 13 31 49 2 20 38 8 26 44 14 32 50 3 21 39 9 27
45 15 33 51
&END FIXED_ATOMS
&END CONSTRAINT
&END MOTION
Regards,
Sreehari
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