[CP2K-user] [CP2K:18619] Re: Doubt regarding the geometry optimization for acetonitrile
Anupriya Nyayban
mamaniphy at gmail.com
Thu Apr 6 05:06:05 UTC 2023
Dear Marcella,
Thank you for the reply. I have tried with information as you have
suggested. The optimized geometry of acetonitrile is not as expected.
Additionally, I could see warning in the output file ( "*** WARNING in
pw/ps_wavelet_methods.F:241 :: Density non-zero on the ***
*** edges of the unit cell: wrong results in WAVELET solver ***").
The input and geometry files are attached herewith.
Thank you!
On Tue, 4 Apr 2023 at 12:52, Marcella Iannuzzi <marci.akira at gmail.com>
wrote:
> Dear Anupriya Nyayban,
>
> The simulation box is far too small
> Moreover, simulating a single molecule, you may want to use
> PERIODIC NONE
> both in
> DFT
> <https://manual.cp2k.org/cp2k-2023_1-branch/CP2K_INPUT/FORCE_EVAL/DFT.html>
> / POISSON
> <https://manual.cp2k.org/cp2k-2023_1-branch/CP2K_INPUT/FORCE_EVAL/DFT/POISSON.html>
> as well as in
> SUBSYS
> <https://manual.cp2k.org/cp2k-2023_1-branch/CP2K_INPUT/FORCE_EVAL/SUBSYS.html>
> / CELL
> <https://manual.cp2k.org/cp2k-2023_1-branch/CP2K_INPUT/FORCE_EVAL/SUBSYS/CELL.html>
> Anyway the simulation box should be much larger.
>
> Regards
> Marcella
>
>
> On Tuesday, April 4, 2023 at 8:47:34 AM UTC+2 Anupriya Nyayban wrote:
>
>> Dear CP2K users,
>>
>> I am a new user of CP2K. I have optimized an explicit molecule of
>> acetonitrile and suspect the final optimized structure.
>> I am unable to find where the mistake is!
>> The input file and the file with all the steps of the geometry
>> optimization is attached herewith.
>>
>> Thank you!
>>
>>
>> --
>> With regards
>> Anupriya Nyayban
>> Project Associate
>> Pradeep Research Group,
>> DST Unit of Nanoscience & Thematic Unit of Excellence,
>> Department of Chemistry,
>> IIT Madras
>>
> --
> You received this message because you are subscribed to the Google Groups
> "cp2k" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to cp2k+unsubscribe at googlegroups.com.
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/cp2k/0ae1b51c-8cfa-4559-850e-0bc0c44e0b9fn%40googlegroups.com
> <https://groups.google.com/d/msgid/cp2k/0ae1b51c-8cfa-4559-850e-0bc0c44e0b9fn%40googlegroups.com?utm_medium=email&utm_source=footer>
> .
>
--
With regards
Anupriya Nyayban
Project Associate
Pradeep Research Group,
DST Unit of Nanoscience & Thematic Unit of Excellence,
Department of Chemistry,
IIT Madras
--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+unsubscribe at googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cp2k/CAA3WfUiCKZKO3FqWS8fO26RqX%3DASxmc-zVr5e0EJj4JQ4uXn%3Dw%40mail.gmail.com.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20230406/d4d8735a/attachment-0001.htm>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: acetonitril-pos-1.xyz
Type: chemical/x-xyz
Size: 44778 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20230406/d4d8735a/attachment-0001.xyz>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: acetonitrile.inp
Type: chemical/x-gamess-input
Size: 3492 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20230406/d4d8735a/attachment-0001.inp>
More information about the CP2K-user
mailing list