[CP2K-user] [CP2K:17802] Error with spglib installation

Krack Matthias (PSI) matthias.krack at psi.ch
Tue Oct 4 07:45:41 UTC 2022


Hi

You have to delete the tar file in the folder cp2k/tools/toolchain/build in which the libs are built. Just remove that build folder. For an installation from scratch, it is the best to remove the build as well as the install folder in cp2k/tools/toolchain.

HTH

Matthias

From: "cp2k at googlegroups.com" <cp2k at googlegroups.com> on behalf of Shivam Gupta <shivam-gupta at pharmafoods.co.jp>
Reply to: "cp2k at googlegroups.com" <cp2k at googlegroups.com>
Date: Tuesday, 4 October 2022 at 09:25
To: "cp2k at googlegroups.com" <cp2k at googlegroups.com>
Subject: Re: [CP2K:17802] Error with spglib installation

Dear Matt

I was facing the same problem while installing spglib. I have manually downloaded downloaded  https://github.com/spglib/spglib/archive/v1.16.2.tar.gz and extracted in the "/home/biomedical/cp2k/cp2k-9.1/tools/toolchain/install" folder. but still it shows the following error.

Please guide me over it.

Thanks

==================== Installing spglib ====================
spglib-1.16.2.tar.gz is found
Installing from scratch into /home/biomedical/cp2k/cp2k-9.1/tools/toolchain/install/spglib-1.16.2

gzip: stdin: unexpected end of file
tar: Child returned status 1
tar: Error is not recoverable: exiting now
ERROR: (./scripts/stage7/install_spglib.sh, line 40) Non-zero exit code detected.
On Saturday, October 1, 2022 at 7:58:30 AM UTC+9 captai... at gmail.com wrote:
HI Matthias

Thanks for your info. Now it works. What I'm doing is change the link "https://github.com/spglib/spglib/archive/v${spglib_ver}.tar.gz<https://github.com/spglib/spglib/archive/v$%7Bspglib_ver%7D.tar.gz> \" to the one you write "https://github.com/spglib/spglib/archive/v1.16.2.tar.gz \" , and before that I delete the spglib-1.16.2.tar.gz (with 0 size) at  build directory. Once again thanks for the advise, and have a nice day

Sincerely
MUS
On Friday, September 30, 2022 at 2:59:19 PM UTC+7 Matthias Krack wrote:
Hi MUS

That’s the strange, the download of https://github.com/spglib/spglib/archive/v1.16.2.tar.gz  works for me.

Matthias

From: "cp... at googlegroups.com" <cp... at googlegroups.com> on behalf of captain mus <captai... at gmail.com>
Reply to: "cp... at googlegroups.com" <cp... at googlegroups.com>
Date: Friday, 30 September 2022 at 04:56
To: "cp... at googlegroups.com" <cp... at googlegroups.com>
Subject: Re: [CP2K:17780] Error with spglib installation

HI Matthias
Thank you for your information.  I recently download the tar.bz2 of the latest CP2K(cp2k.2022.1) but in the file "install_spglib.sh"  the github address is still the old one " https://github.com/atztogo/spglib/archive/v${spglib_ver}.tar.gz<https://github.com/atztogo/spglib/archive/v$%7Bspglib_ver%7D.tar.gz> \".. I tried to change manually to "https://github.com/spglib/spglib/archive/v${spglib_ver}.tar.gz<https://github.com/spglib/spglib/archive/v$%7Bspglib_ver%7D.tar.gz> \" as showed on the link you provided. It does download the "spglib-1.16.2.tar.gz" and placed it at build directory. However, the problem is the tar file is empty (0 k) and return the same error as miose had. Any advise ?

Sincerely
MUS

On Tuesday, September 13, 2022 at 4:55:31 PM UTC+7 Matthias Krack wrote:
Hi

This problem has been reported and fixed recently, see issue https://github.com/cp2k/cp2k/issues/2262

HTH

Matthias

From: "cp... at googlegroups.com" <cp... at googlegroups.com> on behalf of Arseniy Otlyotov <miose... at gmail.com>
Reply to: "cp... at googlegroups.com" <cp... at googlegroups.com>
Date: Monday, 12 September 2022 at 18:36
To: "cp... at googlegroups.com" <cp... at googlegroups.com>
Subject: [CP2K:17656] Error with spglib installation

Dear CP2K developers and users,
could I ask your advice on a small technical question.
I'm trying to install CP2K with

./install_cp2k_toolchain.sh

and facing an error with spglib:

spglib-1.16.2.tar.gz is found
Installing from scratch into /home/soft/programs/cp2k/cp2k-2022.1/tools/toolchain/install/spglib-1.16.2
gzip: stdin: unexpected end of file
tar: Child returned status 1
tar: Error is not recoverable: exiting now
ERROR: (./scripts/stage7/install_spglib.sh, line 40) Non-zero exit code detected.

This seems to appear because of the outdated link in the script to

https://github.com/atztogo/spglib/archive/v1.16.2.tar.gz

I tried installing spglib with

pip install --user spglib

but it did not fix the error. Could you, please, advise how to install this lib correctly?
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