[CP2K-user] [CP2K:16669] Re: Point charges to simulate an electric field?
Бранислав Миловановић
dr.branislavm at gmail.com
Sun Mar 6 00:28:30 UTC 2022
Thanks.
OK, I think I get it now.
So I have set CHARGE keyword to 25, since I want to have 25 fake H atoms
and each to represent smeared charge of +0.28e, and the rest of my system
in neutral.
My KIND section now:
* &KIND X ELEMENT H BASIS_SET NONE POTENTIAL GTH-PBE-q1
CORE_CORRECTION -0.88 &END KIND*
However, when I perform population analysis I find finite population on
these fake atoms:
*Hirshfeld Charges #Atom Element Kind Ref Charge Population
Net charge 1 H 1 0.280 0.046
0.234 2 H 1 0.280 0.047
0.233 3 H 1 0.280
0.052 0.228 4 H 1 0.280
0.055 0.225 5 H 1 0.280
0.046 0.234 6 H 1
0.280 0.051 0.229.*
*.*
*.*
How is this possible when they are described with no basis at all?
Best,
BM
On Wednesday, March 2, 2022 at 5:04:08 PM UTC+1 mattwa... at gmail.com wrote:
> There will be the core charge of the original atom as well - so you need
> neutralise the atom core (-1 in your case) then add your charge back.
> Yes - the charge keyword will alter the number of electrons in the system
> so if you want these to be virtual protons not hydrogen atoms then you do
> need to remove the electron as well with the charge keyword.
> If your overall system is charged then normal issues of charged periodic
> systems apply..
> Matt
>
> On Monday, 28 February 2022 at 12:37:58 UTC dr.bra... at gmail.com wrote:
>
>> Additionally, should I in such cases change total charge od the system?
>>
>> On Wednesday, February 23, 2022 at 2:09:59 PM UTC+1 Бранислав Миловановић
>> wrote:
>>
>>> Thanks, just want to check if this is right way to do this:
>>> I defined atoms labeled *X* in the coord file and then I added this
>>> section into the SUBSYS:
>>>
>>> &KIND X
>>> ELEMENT H
>>> GHOST .TRUE.
>>> BASIS_SET NONE
>>> POTENTIAL GTH-PBE-q1
>>> CORE_CORRECTION 0.12 # 3/25
>>> &END KIND
>>>
>>> Is this the right way to divide for example 3*e* charge over 25 fake
>>> hydrogen atoms?
>>>
>>> Branislav
>>>
>>> On Monday, February 21, 2022 at 4:31:49 PM UTC+1 mattwa... at gmail.com
>>> wrote:
>>>
>>>> Multiple options - most directly:
>>>>
>>>> https://manual.cp2k.org/cp2k-9_1-branch/CP2K_INPUT/FORCE_EVAL/SUBSYS/KIND.html#list_CORE_CORRECTION
>>>> lets you change the core charge on a pseudopotential. If you make a
>>>> fake hydrogen and adjust charge appropriately you'd get close to what you
>>>> were after (won't be a point charge but gaussian smeared charge).
>>>>
>>>> There are other routines that could load an external potential on a
>>>> grid or make use of the QM/MM code in some form.
>>>> Matt
>>>>
>>>>
>>>> On Monday, 21 February 2022 at 15:24:34 UTC dr.bra... at gmail.com wrote:
>>>>
>>>>> Dear cp2k users,
>>>>>
>>>>> Is it possible to introduce ghost atoms with no basis set and with
>>>>> finite non-integer point charge in AIMD calculations? Something like MM
>>>>> point charges.
>>>>>
>>>>> I want to try to simulate behaviour of some small molecules in the
>>>>> electric field which originates from a particular sequence of the point
>>>>> charges.
>>>>>
>>>>> Thanks
>>>>> Branislav
>>>>>
>>>>
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