[CP2K-user] [CP2K:17339] errors during make step of installation of cp2k2022.1
tao weo
weitaoqust at gmail.com
Thu Jul 21 06:28:25 UTC 2022
Dear Developers and Users,
I am trying to install cp2k2022.1 on HPC (centos8)using toolchain script
, but always failed on the step of make -j 52 ARCH=local VERSION="psmp".
*Installation:*
1. ./install_cp2k_toolchain.sh --with-sirius=no --with-mkl --with-intelmpi
--with-plumed=install --with-cmake=system --with-cosma=no
2. cp /opt/software/cp2k-2022.1/tools/toolchain/install/arch/* to the
opt/software/cp2k-2022.1/arch/
3. source /opt/software/cp2k-2022.1/tools/toolchain/install/setup
4. cd cp2k/
make -j 56 ARCH=local VERSION= psmp
*The error is as follows:*
fort: command line warning #10006: ignoring unknown option '-wd279'
ld: cannot find -lxcf03
ld: cannot find -lxc
make[3]: ***
[/opt/software/cp2k-2022.1/exe/local/memory_utilities_unittest.psmp] error 1
make[2]: *** [all] error 2
make[1]: *** [psmp] error 2
make: *** [error] 2
The local.psmp file as follows:
#local.psmp
CC =
/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mpi/intel64/bin/mpiicc
CXX =
/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mpi/intel64/bin/mpiicpc
AR = ar -r
FC =
/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mpi/intel64/bin/mpiifort
LD =
/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mpi/intel64/bin/mpiifort
#
DFLAGS = -D__LIBXSMM -D__parallel -D__MKL -D__FFTW3 -D__SCALAPACK
-D__LIBINT -D__LIBXC -D__ELPA -D__GSL -D__PLUMED2 -D__SPGLIB -D__LIBVORI
#
WFLAGS =
#
FCDEBFLAGS =
CFLAGS = -nofor-main -O2 -fopenmp -fp-model precise -funroll-loops -g
-qopenmp-simd -traceback -xHost -wd279 $(PROFOPT) -m64
-I/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mkl/include
-I/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mkl/include/fftw
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/libint-v2.6.0-cp2k-lmax-5/include'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/libxc-5.2.3/include'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/libxsmm-1.17/include'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/elpa-2021.11.002/cpu/include/elpa_openmp-2021.11.002/modules'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/elpa-2021.11.002/cpu/include/elpa_openmp-2021.11.002/elpa'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/gsl-2.7/include'
-I/opt/software/cp2k-2022.1/tools/toolchain/install/spglib-1.16.2/include
-std=c11 -Wall -Wextra -Werror -Wno-vla-parameter
-Wno-deprecated-declarations $(DFLAGS)
FCFLAGS = -nofor-main -O2 -fopenmp -fp-model precise -funroll-loops -g
-qopenmp-simd -traceback -xHost -wd279 $(PROFOPT) -m64
-I/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mkl/include
-I/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mkl/include/fftw
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/libint-v2.6.0-cp2k-lmax-5/include'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/libxc-5.2.3/include'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/libxsmm-1.17/include'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/elpa-2021.11.002/cpu/include/elpa_openmp-2021.11.002/modules'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/elpa-2021.11.002/cpu/include/elpa_openmp-2021.11.002/elpa'
-I'/opt/software/cp2k-2022.1/tools/toolchain/install/gsl-2.7/include'
-I/opt/software/cp2k-2022.1/tools/toolchain/install/spglib-1.16.2/include
$(FCDEBFLAGS) $(WFLAGS) $(DFLAGS)
CXXFLAGS = -O2 -fPIC -fno-omit-frame-pointer -fopenmp -g -march=native
-mtune=native --std=c++11 $(DFLAGS) -Wno-deprecated-declarations
#
LDFLAGS = $(FCFLAGS) -Wl,--enable-new-dtags
-L'/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release'
-Wl,-rpath='/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mpi/intel64/lib/release'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/libint-v2.6.0-cp2k-lmax-5/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/libxc-5.2.3/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/libxc-5.2.3/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/libxsmm-1.17/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/libxsmm-1.17/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/elpa-2021.11.002/cpu/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/elpa-2021.11.002/cpu/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/gsl-2.7/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/gsl-2.7/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/plumed-2.8.0/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/plumed-2.8.0/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/spglib-1.16.2/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/spglib-1.16.2/lib'
-L'/opt/software/cp2k-2022.1/tools/toolchain/install/libvori-220621/lib'
-Wl,-rpath='/opt/software/cp2k-2022.1/tools/toolchain/install/libvori-220621/lib'
LIBS = -lsymspg -lplumed -ldl -lstdc++ -lz -ldl -lgsl -lelpa_openmp
-lxsmmf -lxsmm -ldl -lpthread -lxcf03 -lxc -lint2 -lmpi -lmpicxx
-L/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mkl/lib/intel64
-Wl,-rpath=/opt/intel-2020/compilers_and_libraries_2020.1.217/linux/mkl/lib/intel64
-lmkl_scalapack_lp64 -Wl,--start-group -lmkl_gf_lp64 -lmkl_sequential
-lmkl_core -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -lpthread -lm -ldl
-lvori -lstdc++ -lstdc++
*Note that these pre-built arch files are for the GNU compiler, users have
to adapt them for other compilers.It is possible to use the provided CP2K
arch files as guidance.*
I cannot clearly understand this note to modify my local.psmp file.
Regards,
weitao
Hainan Univerty
China
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