[CP2K-user] [CP2K:18254] TS Dimer method gives unphysical results
DMT
dobromirak at gmail.com
Sun Dec 25 23:14:34 UTC 2022
Hello,
I tried to use the Dimer method of optimizing TS and I get unphysical
results.
I used this google group to find different input files and read about the
struggles to overcome and used the provided input settings of successful
runs.
In both cases (files attached include input, required .xyz and output .xyz
from the optimization) Dimer drives the structures into having impossibly
short bonds, until the SCF does not even want to converge (and it would be
obviously impossible). It literally tries to merge some atoms in both
cases. I use the &DIMER_VECTOR to input the XYZ displacements from a
VIBRATIONAL_ANALYSIS job for the Reaction Coordinate that I am interested
in, using the guessed near-TS geometries. Without the DIMER_VECTOR the
method always chooses a wrong Reaction path. In both cases the TS geometry
I start with is very simple to provide, in fact I have found both TS with
other software, it is just very important for me to try simple systems in
cp2k before I move to actual research.
One of the reactions is substitution in which the N LP from NH3 attacks the
C of CH3Cl and pushes the Cl away to form a quaternary ammonium cation with
the Cl- around. The other reaction is monomolecular - a keto-O taking a H
from a nearby amino group into an alcohol-imin as a Product.
I have already tried higher values for EPS_DEFAULT (1.0E-13) and EPS_SCF
(1.0E-7), and nothing changes.
I feel like the Dimer simply doesn't know where to stop with increasing the
Energy. Perhaps the choice of DFT (PBE) and basis (DZVP-MOLOPT-GTH (a good
basis)) is bad for the particular PES ?
I would like any advises at all. Do you have success using the Dimer method
? Can you provide input files from successful runs, other than the ones
already in the group conversations ?
Best Regards,
Dobromir
--
You received this message because you are subscribed to the Google Groups "cp2k" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cp2k+unsubscribe at googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cp2k/9c23bb0f-7998-492d-891a-af131da1b6ean%40googlegroups.com.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20221225/a1535fff/attachment-0001.htm>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: mr_input
Type: application/octet-stream
Size: 4070 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20221225/a1535fff/attachment-0001.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: ts_man.xyz
Type: chemical/x-xyz
Size: 457 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20221225/a1535fff/attachment-0002.xyz>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: ts-pos-1.xyz
Type: chemical/x-xyz
Size: 13980 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20221225/a1535fff/attachment-0003.xyz>
More information about the CP2K-user
mailing list