[CP2K-user] [CP2K:16315] How to fix O-H bond
Junbo Lu
lujunbo15 at gmail.com
Mon Nov 29 02:43:07 UTC 2021
Hi,
Thank you very much! Do you have some detailed input? I have seen the
manual about this section, but I am still confused with some keywords:
(1) How do we set ATOM_TYPE? Do I need to set MOLNAME and MOLECULE? It
seems that these two keywords are about QM/MM. My system contains a lot of
H2O, OH- and Na+, and the coordination section is:
Na 9.215 6.592 1.668
Na 14.130 14.360 2.607
O 9.966 14.063 13.214
H 9.488 14.543 12.480
H 10.743 13.638 12.750
O 13.501 5.419 14.746
H 13.691 5.028 13.845
H 12.615 5.047 15.023
O 7.910 9.825 6.157
H 7.948 9.265 5.391
O 7.189 5.650 9.573
H 6.475 5.731 8.952
...
(2) In my system, the Na has no bonds with H. If I just use such simple
input entry, will the Na-H bond be fixed?
With my best regards,
Junbo
'Dawid das' via cp2k <cp2k at googlegroups.com> 于2021年11月29日周一 上午2:19写道:
> Hi,
>
> This part of input will simply constrain all bond lengths at their initial
> value given the bond is between H and any other atom. I think that it is
> only important that atom name type starts with H. Otherwise it is not
> recognized as a hydrogen.
>
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