[CP2K-user] Thermostat setup for ADIABATIC_DYNAMICS (CAFES)
Dongyue Liang
dlia... at wisc.edu
Sat Feb 20 18:30:16 UTC 2021
Dear experts,
I'm trying to apply adiabatic dynamics (CAFES) with DFT MD at an oxide
material - water interface system. Before CAFES, I have performed short (~2
ps) NVT simulation and it works fine. When I try to set up CAFES, I got the
following error:
*******************************************************************************
* ___
*
* / \
*
* [ABORT]
*
* \___/ CPASSERT failed
*
* |
*
* O/|
*
* /| |
*
* / \
motion/thermostat/thermostat_utils.F:507 *
*******************************************************************************
===== Routine Calling Stack =====
2 qs_mol_dyn_low
1 CP2K
I'm attaching my input file at the end of the message. One thing to mention
is that, this error message shows up even when I set the
ADIABATIC_DYNAMICS/THERMOSTAT_FAST/REGION to NONE. However, a regular NVT
setup with everything else identical initializes just fine.
I'm new to CP2K and ab initio MD. Any suggestions will be appreciated.
Best regards,
Dongyue
Input file:
&FORCE_EVAL
METHOD Quickstep
! STRESS_TENSOR ANALYTICAL
&DFT
BASIS_SET_FILE_NAME BASIS_MOLOPT
POTENTIAL_FILE_NAME GTH_POTENTIALS
&MGRID
COMMENSURATE
CUTOFF 500
REL_CUTOFF 40
NGRIDS 6
&END MGRID
&QS
METHOD GPW
EXTRAPOLATION ASPC
EXTRAPOLATION_ORDER 3
EPS_DEFAULT 1.0E-10
&END QS
&SCF
MAX_SCF 50
SCF_GUESS RESTART
EPS_SCF 1.0E-6
&OUTER_SCF
EPS_SCF 1.0E-6
MAX_SCF 500
&END
&OT
PRECONDITIONER FULL_SINGLE_INVERSE
MINIMIZER DIIS
&END
&END SCF
&XC
&XC_FUNCTIONAL PBE
&END XC_FUNCTIONAL
&VDW_POTENTIAL
DISPERSION_FUNCTIONAL PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD3
PARAMETER_FILE_NAME dftd3.dat
REFERENCE_FUNCTIONAL PBE
&END PAIR_POTENTIAL
&END VDW_POTENTIAL
&END XC
&END DFT
&SUBSYS
&CELL
ABC 9.84650676 11.3670307 42.6
PERIODIC XYZ
&END CELL
&TOPOLOGY
COORD_FILE_NAME equil.pdb
COORDINATE pdb
CONN_FILE_FORMAT psf
CONN_FILE_NAME solvation_mod_mass.psf
PARA_RES .FALSE.
&END TOPOLOGY
&KIND LIXI
ELEMENT Li
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q3
&END KIND
&KIND COXI
ELEMENT Co
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q17
&END KIND
&KIND OXI1
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND OXI2
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND OXH1
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND OXH2
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND OXT1
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND OXT2
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND HTX
ELEMENT H
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q1
MASS 2.016
&END KIND
&KIND OT
ELEMENT O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND HT
ELEMENT H
MASS 2.016
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q1
&END KIND
&END SUBSYS
&END FORCE_EVAL
&MOTION
&MD
ENSEMBLE NVT_ADIABATIC !NVT
TIMESTEP 0.5
STEPS 10000
&ADIABATIC_DYNAMICS
TEMP_FAST 1200
TEMP_SLOW 300
&THERMOSTAT_FAST
REGION NONE !DEFINED
&DEFINE_REGION
LIST 4
&END DEFINE_REGION
&NOSE
LENGTH 3
YOSHIDA 3
TIMECON 100
MTS 2
&END NOSE
&END THERMOSTAT_FAST
&THERMOSTAT_SLOW
REGION GLOBAL !DEFINED
&NOSE
LENGTH 3
YOSHIDA 3
TIMECON 100
MTS 2
&END NOSE
! &DEFINE_REGION
! LIST 1..3
! LIST 5..531
! &END DEFINE_REGION
&END THERMOSTAT_SLOW
&END ADIABATIC_DYNAMICS
! TEMPERATURE 300
! &THERMOSTAT
! &NOSE
! LENGTH 3
! YOSHIDA 3
! TIMECON 100
! MTS 2
! &END NOSE
! &END THERMOSTAT
&PRINT
&ENERGY
&EACH
MD 1
&END
&END ENERGY
&COEFFICIENTS
&EACH
MD 1
&END
&END COEFFICIENTS
&TEMP_KIND
&EACH
MD 1
&END
&END TEMP_KIND
&PROGRAM_RUN_INFO
&EACH
MD 10
&END
&END PROGRAM_RUN_INFO
&END PRINT
&END MD
&PRINT
&VELOCITIES OFF
&END VELOCITIES
&FORCES OFF
&END FORCES
&RESTART_HISTORY OFF
&END RESTART_HISTORY
&RESTART
&EACH
MD 2
&END
&END RESTART
&TRAJECTORY
&EACH
MD 2
&END EACH
FORMAT DCD
&END
&END PRINT
&END MOTION
&GLOBAL
PROJECT lco_md
RUN_TYPE MD
PRINT_LEVEL LOW
&END GLOBAL
&EXT_RESTART
RESTART_FILE_NAME lco_md-1.restart
RESTART_DEFAULT F
RESTART_POS T
RESTART_VEL T
RESTART_CELL T
RESTART_CORE_POS T
RESTART_CORE_VELOCITY T
&END EXT_RESTART
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