[CP2K-user] Question about FIXED_ATOMS in MM simulation
sm...@gmail.com
smal... at gmail.com
Wed Apr 21 14:55:21 UTC 2021
Dear all,
I'm trying to create a cavity in Ar solution. (Ar system is meaningless.
I'm just testing the function of input) I define atom V to represent the
cavity center and set a repulsive nonbonded potential between V and Ar
atoms. I use FIXED_ATOMS to fix V, however, I found V slightly moves during
the MD process. I wonder how CP2K achieves FIXED_ATOMS in code? Is the
force reset to be zero at every step?
The following is my input file and .xyz file is in the attachment.
&GLOBAL
PROJECT Ar
RUN_TYPE MD
PRINT_LEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD FIST
&SUBSYS
&CELL
ABC 16.0 16.0 16.0
ALPHA_BETA_GAMMA 90.0 90.0 90.0
&END CELL
&TOPOLOGY
COORD_FILE_FORMAT XYZ
COORD_FILE_NAME all.xyz
&END TOPOLOGY
&END SUBSYS
&MM
&FORCEFIELD
&SPLINE
EMAX_SPLINE 1000000
&END SPLINE
&CHARGE
ATOM Ar
CHARGE 0.0
&END CHARGE
&CHARGE
ATOM V
CHARGE 0.0
&END CHARGE
&NONBONDED
&GENPOT
ATOMS V Ar
FUNCTION A*((S/r)^12-2*(S/r)^6+0.25)
VARIABLES r
PARAMETERS A S
VALUES 0.00104506265 6.0
RCUT 3.0
&END GENPOT
&LENNARD-JONES
atoms Ar Ar
EPSILON [K_e] 119.8
SIGMA [angstrom] 3.401
RCUT [angstrom] 8.0
&END LENNARD-JONES
&LENNARD-JONES
atoms V V
EPSILON [K_e] 0.0
SIGMA [angstrom] 3.401
RCUT [angstrom] 8.0
&END LENNARD-JONES
&END NONBONDED
&END FORCEFIELD
&POISSON
PERIODIC NONE
&EWALD
EWALD_TYPE none
&END EWALD
&END POISSON
&END MM
&END FORCE_EVAL
&MOTION
&CONSTRAINT
CONSTRAINT_INIT TRUE
&FIXED_ATOMS
COMPONENTS_TO_FIX XYZ
LIST 1
&END FIXED_ATOMS
&END CONSTRAINT
&MD
COMVEL_TOL 2.0E-6
ENSEMBLE NVT
STEPS 10000
TIMESTEP 0.5
TEMPERATURE 330.0
TEMP_TOL 50.0
&THERMOSTAT
&NOSE
LENGTH 3
YOSHIDA 3
TIMECON 1000.0
MTS 2
&END NOSE
&END THERMOSTAT
&END MD
&PRINT
&TRAJECTORY
&EACH
MD 10
&END EACH
&END TRAJECTORY
&END PRINT
&END MOTION
Sincerely,
Mengzi Zhou
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