[CP2K-user] [CP2K:13546] IC-QMMM with single charge in front of a metal plane: open boundary corrections
Katharina Doblhoff-Dier
k.doblh... at lic.leidenuniv.nl
Wed Jun 24 14:36:18 UTC 2020
Dear Dorothea,
Thank you for your answer.
I am not sure if I understand your question correctly
>
On the longer run, we are interested in describing an electrolyte above a
metal surface and using a charge imbalance to create a potential drop at
the interface very much as one would do in a pure DFT calculation, but then
withouth the need to describe the metal quantum mechanically. I know that
this is not the original idea behind the image charge method as implemented
in cp2k, but I thought it may offer a work around. So to understand how
things work, I simply considered an H2+ molecule above a surface. This is
similar to the model system used by Siepmann and Sprik in their 1995
publication, just that they used an MM point charge above a metal. In
principle, it should be possible to determine V_0 from the condition that
the energy should be minimized, and the resulting counter charge should
exactly cancel the charge in front of the metal.
and what your computational setup is.
>
I paste here an example of the input that I used with MT boundary
conditions. The resulting plot for the Hartree-potential (obtained using
&V_HARTREE_CUBE and then averaging over x and y to get a plot over z) is
shown in the third image in my original post (green line).
As you can see, I simply adapted the input file from the GUA example on the
web, by replacing the GUA in the xyz file by H2, setting the DFT charge to
1 and changing the poisson solver in the DFT and MM part. The potential
EXT_POTENTIAL was determined by running 2 calculations with changing
EXT_POTENTIAL_1 and EXT_POTENTIAL_2, and then determining EXT_POTENTIAL_3
by requiring that the resulting charge should be -1 and assuming a linear
relationship (which for this system is perfectly followed, giving me a
total charge on the metal of -1)
-----------------Begin sample input file using the MT poisson
solver------------------
&FORCE_EVAL
METHOD QMMM
&DFT
CHARGE 1
LSD
BASIS_SET_FILE_NAME BASIS_MOLOPT
POTENTIAL_FILE_NAME GTH_POTENTIALS
&POISSON
&EWALD
EWALD_TYPE ewald
ALPHA .44
GMAX 21
&END EWALD
POISSON_SOLVER MT
PERIODIC XY
&END POISSON
&MGRID
COMMENSURATE
CUTOFF 300
NGRIDS 5
&END MGRID
&QS
METHOD GPW
EXTRAPOLATION ASPC
EXTRAPOLATION_ORDER 3
&END QS
&SCF
MAX_SCF 300
SCF_GUESS ATOMIC
# SCF_GUESS RESTART
EPS_SCF 1.0E-6
&OT
PRECONDITIONER FULL_SINGLE_INVERSE
MINIMIZER DIIS
&END
&END SCF
&XC
&XC_FUNCTIONAL PBE
&END XC_FUNCTIONAL
&VDW_POTENTIAL
DISPERSION_FUNCTIONAL PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD3
CALCULATE_C9_TERM .TRUE.
REFERENCE_C9_TERM
PARAMETER_FILE_NAME dftd3.dat
REFERENCE_FUNCTIONAL PBE
R_CUTOFF [angstrom] 16.0
&END PAIR_POTENTIAL
&END VDW_POTENTIAL
&END XC
&PRINT
&V_HARTREE_CUBE
&END
&END
&END DFT
&MM
&FORCEFIELD
&CHARGE
ATOM Au
CHARGE 0
&END CHARGE
&CHARGE
ATOM H
CHARGE 0
&END CHARGE
&SPLINE
EPS_SPLINE 1.E-5
#EMAX_SPLINE 2.0
&END
&NONBONDED
&EAM
atoms Au Au
PARM_FILE_NAME Au.pot
&END EAM
&LENNARD-JONES
atoms Au H
EPSILON 0.0
SIGMA 3.166
RCUT 15
&END LENNARD-JONES
&LENNARD-JONES
atoms H H
EPSILON 0.0
SIGMA 3.166
RCUT 15
&END LENNARD-JONES
&END
&END FORCEFIELD
&POISSON
&EWALD
EWALD_TYPE ewald
ALPHA .44
GMAX 21
&END EWALD
POISSON_SOLVER MT
PERIODIC XY
&END POISSON
&END MM
&QMMM
CENTER NEVER
&CELL
ABC [angstrom] 34.6055 29.9693 60.0
PERIODIC XY
&END CELL
&QM_KIND H
MM_INDEX 577..578
&END QM_KIND
&IMAGE_CHARGE
EXT_POTENTIAL 1.24534
MM_ATOM_LIST 1..576
WIDTH 3.5
&END IMAGE_CHARGE
&PRINT
&IMAGE_CHARGE_INFO
&END
&END
&END QMMM
&SUBSYS
&CELL
ABC [angstrom] 34.6055 29.9693 60.0
PERIODIC XY
&END CELL
&TOPOLOGY
COORD_FILE_NAME Au_gua_image_dampFunc-opt.xyz
COORDINATE xyz
&END
&KIND H
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q1
&END KIND
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT Au_gua_image_dampFunc
RUN_TYPE energy
&END GLOBAL
-----------------End sample input file using the MT poisson
solver------------------
>If you have a charged system in the QM part, then you need a solver like
MT, like in a standard QM calculation.
Yes, I would have thought, that this is what I am doing, but the resulting
plot for the hartree potential looks strange (shielding charges in the
metal, leading to a potential gradient in the metal instead of a constant)
and I cannot seem to find an energy minimum, when the potential is chosen
such, that the image charge is exatly shielded, which was one of the test
systems in the Siepmann Sprik paper
(https://aip.scitation.org/doi/abstract/10.1063/1.469429).
I guess the latter is my main issue, as we will depend heavily on the
energies. (Hence I need to understand what they contain)
Thank you for your help,
Katharina
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20200624/519c671e/attachment.htm>
More information about the CP2K-user
mailing list