[CP2K-user] CP2K NVT writes *.ener and *.xyz files, while NPT - not
i.a.ba... at gmail.com
i.a.ba... at gmail.com
Wed Mar 6 18:43:26 UTC 2019
Hi all! I am really puzzled with the folowing situation. I want to perform
NPT simulation of the system, before it, I've performed NVT simulation with
some reasonable volume and I've got *.ener with energy and temperature
information file and *.xyz file with atoms trajectory. But when I change a
bit *.inp file for performing NPT simulation *.ener and *.xyz files are not
written, moreover, *.out file updates but there is no information about MD
steps, just SCF loop till the convergence, then another SCF loop, then
another and so on. Here I provide my NVT and NPT inputs:
*NVT*
&GLOBAL
PROJECT HEA
RUN_TYPE MD
IOLEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD Quickstep
&DFT
UKS .TRUE.
BASIS_SET_FILE_NAME BASIS_MOLOPT
POTENTIAL_FILE_NAME GTH_POTENTIALS
CHARGE 0
# MULTIPLICITY 1
&MGRID
CUTOFF [Ry] 250
&END
&QS
METHOD GPW
EPS_DEFAULT 1.0E-10
EXTRAPOLATION ASPC
&END
&POISSON
PERIODIC XYZ ! the default, gas phase systems should have 'NONE' and
a wavelet solver
&END
&PRINT
&E_DENSITY_CUBE OFF
&END E_DENSITY_CUBE
&MO_CUBES
NLUMO 4
NHOMO 4
WRITE_CUBE .FALSE.
&EACH
MD 10
&END
&END
&END
&SCF
SCF_GUESS RESTART
EPS_SCF 1.0E-4
MAX_SCF 100
ADDED_MOS 1000
CHOLESKY INVERSE
&SMEAR ON
METHOD FERMI_DIRAC
ELECTRONIC_TEMPERATURE [K] 2773
&END SMEAR
&DIAGONALIZATION
ALGORITHM STANDARD
&END DIAGONALIZATION
&MIXING
METHOD BROYDEN_MIXING
ALPHA 0.1
BETA 1.5
NBROYDEN 8
&END
&END SCF
&XC
&XC_FUNCTIONAL
&PBE
&END
&END XC_FUNCTIONAL
&END XC
&END DFT
&SUBSYS
&CELL
ABC [angstrom] 18.00 18.00 18.00
&END CELL
&TOPOLOGY
COORD_FILE_NAME HEA.xyz
COORD_FILE_FORMAT XYZ
&END
&KIND Ti
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END
&KIND Zr
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END
&KIND Nb
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q13
&END
&KIND Hf
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END
&KIND Ta
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q13
&END
&END SUBSYS
&END FORCE_EVAL
&MOTION
&GEO_OPT
OPTIMIZER LBFGS
MAX_ITER 100
MAX_DR [bohr] 0.003 ! adjust target as needed
&LBFGS
&END
&END
&MD
ENSEMBLE NVT ! sampling the canonical ensemble, accurate properties
might need NVE
TEMPERATURE [K] 2773
TIMESTEP [fs] 1.0
STEPS 1000
&THERMOSTAT
REGION MASSIVE
TYPE NOSE
&NOSE
&END NOSE
&END THERMOSTAT
&END
&PRINT
&TRAJECTORY
&EACH
MD 1
&END EACH
&END TRAJECTORY
&VELOCITIES OFF
&END VELOCITIES
&FORCES OFF
&END FORCES
&RESTART_HISTORY
&EACH
MD 1000
&END EACH
&END RESTART_HISTORY
&RESTART
BACKUP_COPIES 3
&EACH
MD 1
&END EACH
&END RESTART
&END PRINT
&END
&EXT_RESTART
RESTART_FILE_NAME HEA-1.restart
&END
*NPT*
&GLOBAL
PROJECT HEA
RUN_TYPE MD
IOLEVEL LOW
&END GLOBAL
&FORCE_EVAL
METHOD Quickstep
STRESS_TENSOR NUMERICAL
&DFT
UKS .TRUE.
BASIS_SET_FILE_NAME BASIS_MOLOPT
POTENTIAL_FILE_NAME GTH_POTENTIALS
CHARGE 0
# MULTIPLICITY 1
&MGRID
CUTOFF [Ry] 500
&END
&QS
METHOD GPW
EPS_DEFAULT 1.0E-10
EXTRAPOLATION ASPC
&END
&POISSON
PERIODIC XYZ ! the default, gas phase systems should have 'NONE' and
a wavelet solver
&END
&PRINT
&E_DENSITY_CUBE OFF
&END E_DENSITY_CUBE
&MO_CUBES
NLUMO 4
NHOMO 4
WRITE_CUBE .FALSE.
&EACH
MD 10
&END
&END
&END
&SCF
SCF_GUESS RESTART
EPS_SCF 1.0E-4
MAX_SCF 100
ADDED_MOS 1000
CHOLESKY INVERSE
&SMEAR ON
METHOD FERMI_DIRAC
ELECTRONIC_TEMPERATURE [K] 2773
&END SMEAR
&DIAGONALIZATION
ALGORITHM STANDARD
&END DIAGONALIZATION
&MIXING
METHOD BROYDEN_MIXING
ALPHA 0.1
BETA 1.5
NBROYDEN 8
&END
&END SCF
&XC
&XC_FUNCTIONAL
&PBE
&END
&END XC_FUNCTIONAL
&END XC
&END DFT
&SUBSYS
&CELL
ABC [angstrom] 18.00 18.00 18.00
&END CELL
&TOPOLOGY
COORD_FILE_NAME HEA.xyz
COORD_FILE_FORMAT XYZ
&END
&KIND Ti
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END
&KIND Zr
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END
&KIND Nb
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q13
&END
&KIND Hf
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END
&KIND Ta
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q13
&END
&END SUBSYS
&END FORCE_EVAL
&MOTION
&GEO_OPT
OPTIMIZER LBFGS
MAX_ITER 100
MAX_DR [bohr] 0.003 ! adjust target as needed
&LBFGS
&END
&END
&MD
ENSEMBLE NPT_I
TEMPERATURE [K] 2773
TIMESTEP [fs] 1.0
STEPS 1000
&THERMOSTAT
TYPE NOSE
&NOSE
TIMECON 1000
&END NOSE
&END THERMOSTAT
&BAROSTAT
PRESSURE 1.00
TIMECON 1000
&END BAROSTAT
&END MD
&PRINT
&CELL
&EACH
MD 1
&END EACH
&END CELL
&TRAJECTORY
&EACH
MD 1
&END EACH
&END TRAJECTORY
&RESTART
&EACH
MD 5
&END EACH
&END RESTART
&END PRINT
&END
#&EXT_RESTART
# RESTART_FILE_NAME HEA-1.restart
#&END
Thank you!
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