[CP2K-user] some problem with input file: external file cannot be opened
董济超
dj... at outlook.com
Fri Jun 28 03:15:34 UTC 2019
Dear all,
hello everyone, I am fresh to use cp2k, my version is 2.5.0
here some problems happened to me when i make some input file to calculate
MD.
1. in the input file input1.inp, when i set the coordinates to another
file, the program cannot work and the error is given as:
********************************************
4 *** ERROR in open_file (MODULE cp_files) ***
5 ********************************************
6
7 *** The specified OLD file <a1.xyz # Adapt this ***
8 *** name above> cannot be opened. It does not exist.
***
9
10 *** Program stopped at line number 375 of MODULE cp_files ***
11
12 ===== Routine Calling Stack =====
13
14 2 handle_ext_restart
15 1 check_cp2k_input
16 CP2K| Abnormal program termination, stopped by process number 0
17 application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
18 yhrun: error: cn374: task 0: Exited with exit code 1
19 yhrun: First task exited 60s ago
20 yhrun: tasks 1-71: running
21 yhrun: task 0: exited abnormally
22 yhrun: Terminating job step 14165020.0
23 slurmd[cn374]: *** STEP 14165020.0 KILLED AT 2019-06-28T10:29:40 WITH
SIGNAL 9 ***
24 yhrun: Job step aborted: Waiting up to 2 seconds for job step to finish.
25 slurmd[cn374]: *** STEP 14165020.0 KILLED AT 2019-06-28T10:29:40 WITH
SIGNAL 9 ***
26 yhrun: error: cn374: tasks 1-11: Killed
~
I put input1.inp and a1.xyz at the same folder.
then i just remove "@INCLUDE a1.txt # Adapt this", and copy
the coordinates from a1.xyz to input1.inp, it works.
BUT WHY THIS ERROR HAPPENED?
could anyone help me and tell me how to do, please.
2. then i change the thermostat to run another md based on 1, BUT similar
problem happends:
********************************************
4 *** ERROR in open_file (MODULE cp_files) ***
5 ********************************************
6
7 *** The specified OLD file <PropOx-1.restart # Needs to match
project ***
8 *** name above> cannot be opened. It does not exist.
***
9
10 *** Program stopped at line number 375 of MODULE cp_files ***
11
12 ===== Routine Calling Stack =====
13
14 2 handle_ext_restart
15 1 check_cp2k_input
16 CP2K| Abnormal program termination, stopped by process number 0
17 application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
18 yhrun: error: cn374: task 0: Exited with exit code 1
19 yhrun: First task exited 60s ago
20 yhrun: tasks 1-71: running
21 yhrun: task 0: exited abnormally
22 yhrun: Terminating job step 14165020.0
23 slurmd[cn374]: *** STEP 14165020.0 KILLED AT 2019-06-28T10:29:40 WITH
SIGNAL 9 ***
24 yhrun: Job step aborted: Waiting up to 2 seconds for job step to finish.
25 slurmd[cn374]: *** STEP 14165020.0 KILLED AT 2019-06-28T10:29:40 WITH
SIGNAL 9 ***
26 yhrun: error: cn374: tasks 1-11: Killed
~
please refer to input2.inp and PropOx-1.restart
here i delete "@INCLUDE a1.txt # Adapt this" and copy the
last frame of MD1
I try my best to search my problem but it still there and I hope anyone
know the reason can tell me why and how to do.
thank you very much!!!
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