[CP2K-user] Running cp2k H2O-64 benchmark
Kevin Olson
kols... at gmail.com
Mon Jul 1 18:39:04 UTC 2019
Hello,
I am attempting to run the H2O-64 benchmark on a cluster where each node of
the cluster is a multi-core processor.
When I run 32 MPI ranks (1 OpenMP thread per rank) the code seems to run
fine. But, when I run on 2 nodes with 64 MPI ranks I get the error from
cp2k at the bottom of this message. It appears that its looking for some
file that does not exist. Is this really the case? If so, what file is it
looking for? What is the fix?
Thanks for any help you can give.
DBCSR| Multiplication driver
BLAS
DBCSR| Multrec recursion limit
512
DBCSR| Multiplication stack size
1000
DBCSR| Maximum elements for images
UNLIMITED
DBCSR| Multiplicative factor virtual images
1
DBCSR| Multiplication size stacks
3
DBCSR| Number of 3D layers
SINGLE
DBCSR| Use MPI memory allocation
T
DBCSR| Use RMA algorithm
F
DBCSR| Use Communication thread
T
DBCSR| Communication thread load
87
**** **** ****** ** PROGRAM STARTED AT 2019-07-01
07:58:24.079
***** ** *** *** ** PROGRAM STARTED ON
pluto24
** **** ****** PROGRAM STARTED BY
kevino
***** ** ** ** ** PROGRAM PROCESS ID
148378
**** ** ******* ** PROGRAM STARTED IN
/mnt/local/rundirs/cp2k_44408
CP2K| version string: CP2K
version 6.1
CP2K| source code revision number:
svn:18464
CP2K| cp2kflags: omp fftw3 parallel mpi3 scalapack
CP2K| is freely available from
https://www.cp2k.org/
CP2K| Program compiled at Tue Jun 25 14:09:59 CDT
2019
CP2K| Program compiled on
slurmmaster1
CP2K| Program compiled for
local
CP2K| Data directory path
/home/kevino/cp2k-6.1.0/data
CP2K| Input file name
H2O-64.inp
GLOBAL| Force Environment number
1
GLOBAL| Basis set file name
GTH_BASIS_SETS
GLOBAL| Potential file name
POTENTIAL
GLOBAL| MM Potential file name
MM_POTENTIAL
GLOBAL| Coordinate file name
__STD_INPUT__
GLOBAL| Method name
CP2K
GLOBAL| Project name
H2O-64
GLOBAL| Preferred FFT library
FFTW3
GLOBAL| Preferred diagonalization lib.
SL
GLOBAL| Run type
MD
GLOBAL| All-to-all communication in single precision
F
GLOBAL| FFTs using library dependent lengths
F
GLOBAL| Global print level
LOW
GLOBAL| Total number of message passing processes
64
GLOBAL| Number of threads for this process
1
GLOBAL| This output is from process
0
GLOBAL| CPU model name :
MEMORY| system memory details [Kb]
MEMORY| rank 0 min max
average
MEMORY| MemTotal 1056473636 1056473628 1056473636
1056473632
MEMORY| MemFree 1045884808 1045827832 1045884948
1045856387
MEMORY| Buffers 1264 1264 1380
1322
MEMORY| Cached 265260 265140 278672
271907
MEMORY| Slab 836952 804512 836952
820732
MEMORY| SReclaimable 176736 165492 176736
171114
MEMORY| MemLikelyFree 1046328068 1046273376 1046328088
1046300731
GENERATE| Preliminary Number of Bonds generated:
0
GENERATE| Achieved consistency in connectivity generation.
*******************************************************************************
* ___
*
* / \
*
* [ABORT]
*
* \___/ A floating point type object was expected, found end of the
line, *
* | File: '', Line: 1001, Column: , Chunk: < >
*
* O/|
*
* /| |
*
* / \ input/cp_parser_methods.F:1186
*
*******************************************************************************
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