[CP2K-user] (no subject)

[Mozhdeh Mohammadpour]

Dear cp2k users and developers
While compilation of cp2k by toolchain, I encounter a problem with libxsmm.
The error says that this part is installed by a different version of gnu
fortran. But i checked the log files that mentioned gfortran version as
5.4.0.
Is there any comment?
Error description is presented in the previous email.
Thanks in advance.

On Apr 17, 2019 4:47 PM, "Mozhdeh Mohammadpour" <
mozhdehmo... at gmail.com> wrote:

>
>        USE libxsmm, ONLY: libxsmm_timer_tick, libxsmm_timer_duration
>           1
> Fatal Error: Cannot read module file ‘libxsmm.mod’ opened at (1), because
> it was created by a different version of GNU Fortran
> compilation terminated.
> /home/mozhdeh/cp2k/exts/dbcsr/Makefile:484: recipe for target
> 'dbcsr_machine.o' failed
> make[4]: *** [dbcsr_machine.o] Error 1
> /home/mozhdeh/cp2k/tools/build_utils/fypp -n
> --line-marker-format=gfortran5 /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F
> dbcsr_machine.F90
> Makefile:135: recipe for target 'libdbcsr' failed
> make[3]: *** [libdbcsr] Error 2
> /home/mozhdeh/cp2k/exts/Makefile.inc:16: recipe for target 'dbcsr' failed
> make[2]: *** [dbcsr] Error 2
> make[2]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F:77:10:
>
>        USE libxsmm, ONLY: libxsmm_timer_tick, libxsmm_timer_duration
>           1
> Fatal Error: Cannot read module file ‘libxsmm.mod’ opened at (1), because
> it was created by a different version of GNU Fortran
> compilation terminated.
> /home/mozhdeh/cp2k/exts/dbcsr/Makefile:484: recipe for target
> 'dbcsr_machine.o' failed
> make[4]: *** [dbcsr_machine.o] Error 1
> Makefile:135: recipe for target 'libdbcsr' failed
> make[3]: *** [libdbcsr] Error 2
> /home/mozhdeh/cp2k/exts/Makefile.inc:16: recipe for target 'dbcsr' failed
> make[2]: *** [dbcsr] Error 2
> make[2]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F:77:10:
>
>        USE libxsmm, ONLY: libxsmm_timer_tick, libxsmm_timer_duration
>           1
> Fatal Error: Cannot read module file ‘libxsmm.mod’ opened at (1), because
> it was created by a different version of GNU Fortran
> compilation terminated.
> /home/mozhdeh/cp2k/exts/dbcsr/Makefile:484: recipe for target
> 'dbcsr_machine.o' failed
> make[4]: *** [dbcsr_machine.o] Error 1
> Makefile:135: recipe for target 'libdbcsr' failed
> make[3]: *** [libdbcsr] Error 2
> /home/mozhdeh/cp2k/exts/Makefile.inc:16: recipe for target 'dbcsr' failed
> make[2]: *** [dbcsr] Error 2
> make[2]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/tools/build_utils/fypp -n
> --line-marker-format=gfortran5 /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F
> dbcsr_machine.F90
> /home/mozhdeh/cp2k/tools/toolchain/install/gcc-8.3.0/bin/gfortran -c
> -march=native -fno-omit-frame-pointer -g  -O3 -funroll-loops
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/openblas-0.3.5/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/fftw-3.3.8/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libint-1.1.6/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxc-4.3.4/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxsmm-1.10.0/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/gsl-2.5/include'
> -I/home/mozhdeh/cp2k/tools/toolchain/install/spglib-1.12.2/include
> -I/home/mozhdeh/cp2k/tools/toolchain/install/hdf5-1.10.4/include
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/json_fortran-7.0.0/include'
> -ffree-form -std=f2008 -fimplicit-none  -Werror=aliasing -Werror=ampersand
> -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std
> -Werror=line-truncation -Werror=tabs -Werror=target-lifetime
> -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable
> -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip
> -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only
> -D__LIBXSMM   -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6
> -D__LIBDERIV_MAX_AM1=5 -D__LIBXC -D__HAS_smm_dnn    -D__SPGLIB
> -D__JSON   -D__SHORT_FILE__="\"dbcsr_machine_internal.F\""
> -I'/home/mozhdeh/cp2k/exts/dbcsr/src/base/' -I'/home/mozhdeh/cp2k/exts/dbcsr/src'
> dbcsr_machine_internal.F90
> mpif90 -c -march=native -fno-omit-frame-pointer -g  -O3 -funroll-loops
> -fopenmp -I'/home/mozhdeh/cp2k/tools/toolchain/install/openmpi-3.1.3/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/openblas-0.3.5/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/fftw-3.3.8/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libint-1.1.6/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxc-4.3.4/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxsmm-1.10.0/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/elpa-2017.
> 05.003/include/elpa_openmp-2017.05.003/modules'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/elpa-2017.
> 05.003/include/elpa_openmp-2017.05.003/elpa' -I'/home/mozhdeh/cp2k/tools/
> toolchain/install/gsl-2.5/include' -I/home/mozhdeh/cp2k/tools/
> toolchain/install/spglib-1.12.2/include -I/home/mozhdeh/cp2k/tools/
> toolchain/install/hdf5-1.10.4/include -I/home/mozhdeh/cp2k/tools/
> toolchain/install/libvdwxc-master-429a80027a2ec2c97e2f6d9a3dc84843f2739865/include
> -I/home/mozhdeh/cp2k/tools/toolchain/install/sirius-6.1.2/include
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/json_fortran-7.0.0/include'
> -ffree-form -std=f2008 -fimplicit-none  -Werror=aliasing -Werror=ampersand
> -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std
> -Werror=line-truncation -Werror=tabs -Werror=target-lifetime
> -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable
> -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip
> -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only
> -D__LIBXSMM  -D__parallel  -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6
> -D__LIBDERIV_MAX_AM1=5 -D__LIBXC -D__HAS_smm_dnn -D__SCALAPACK
> -D__ELPA=201705 -D__GSL -D__SPGLIB -D__HDF5 -D__LIBVDWXC -D__SIRIUS
> -D__JSON   -D__SHORT_FILE__="\"dbcsr_machine.F\""
> -I'/home/mozhdeh/cp2k/exts/dbcsr/src/base/' -I'/home/mozhdeh/cp2k/exts/dbcsr/src'
> dbcsr_machine.F90
> /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F:77:10:
>
>        USE libxsmm, ONLY: libxsmm_timer_tick, libxsmm_timer_duration
>           1
> Fatal Error: Cannot read module file ‘libxsmm.mod’ opened at (1), because
> it was created by a different version of GNU Fortran
> compilation terminated.
> /home/mozhdeh/cp2k/exts/dbcsr/Makefile:484: recipe for target
> 'dbcsr_machine.o' failed
> make[4]: *** [dbcsr_machine.o] Error 1
> Makefile:135: recipe for target 'libdbcsr' failed
> make[3]: *** [libdbcsr] Error 2
> /home/mozhdeh/cp2k/exts/Makefile.inc:16: recipe for target 'dbcsr' failed
> make[2]: *** [dbcsr] Error 2
> make[2]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/tools/toolchain/install/gcc-8.3.0/bin/gfortran -c
> -march=native -fno-omit-frame-pointer -g  -O3 -funroll-loops  -fopenmp
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/openblas-0.3.5/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/fftw-3.3.8/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libint-1.1.6/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxc-4.3.4/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxsmm-1.10.0/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/gsl-2.5/include'
> -I/home/mozhdeh/cp2k/tools/toolchain/install/spglib-1.12.2/include
> -I/home/mozhdeh/cp2k/tools/toolchain/install/hdf5-1.10.4/include
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/json_fortran-7.0.0/include'
> -ffree-form -std=f2008 -fimplicit-none  -Werror=aliasing -Werror=ampersand
> -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std
> -Werror=line-truncation -Werror=tabs -Werror=target-lifetime
> -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable
> -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip
> -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only
> -D__LIBXSMM   -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6
> -D__LIBDERIV_MAX_AM1=5 -D__LIBXC -D__HAS_smm_dnn    -D__SPGLIB
> -D__JSON   -D__SHORT_FILE__="\"dbcsr_machine.F\""
> -I'/home/mozhdeh/cp2k/exts/dbcsr/src/base/' -I'/home/mozhdeh/cp2k/exts/dbcsr/src'
> dbcsr_machine.F90
> /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F:77:10:
>
>        USE libxsmm, ONLY: libxsmm_timer_tick, libxsmm_timer_duration
>           1
> Fatal Error: Cannot read module file ‘libxsmm.mod’ opened at (1), because
> it was created by a different version of GNU Fortran
> compilation terminated.
> /home/mozhdeh/cp2k/exts/dbcsr/Makefile:484: recipe for target
> 'dbcsr_machine.o' failed
> make[4]: *** [dbcsr_machine.o] Error 1
> Makefile:135: recipe for target 'libdbcsr' failed
> make[3]: *** [libdbcsr] Error 2
> /home/mozhdeh/cp2k/exts/Makefile.inc:16: recipe for target 'dbcsr' failed
> make[2]: *** [dbcsr] Error 2
> make[2]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/tools/build_utils/fypp -n
> --line-marker-format=gfortran5 /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F
> dbcsr_machine.F90
> /home/mozhdeh/cp2k/tools/toolchain/install/gcc-8.3.0/bin/gfortran -c
> -march=native -fno-omit-frame-pointer -g  -O3 -funroll-loops
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/openblas-0.3.5/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/fftw-3.3.8/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libint-1.1.6/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxc-4.3.4/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/libxsmm-1.10.0/include'
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/gsl-2.5/include'
> -I/home/mozhdeh/cp2k/tools/toolchain/install/spglib-1.12.2/include
> -I/home/mozhdeh/cp2k/tools/toolchain/install/hdf5-1.10.4/include
> -I'/home/mozhdeh/cp2k/tools/toolchain/install/json_fortran-7.0.0/include'
> -ffree-form -std=f2008 -fimplicit-none  -Werror=aliasing -Werror=ampersand
> -Werror=c-binding-type -Werror=intrinsic-shadow -Werror=intrinsics-std
> -Werror=line-truncation -Werror=tabs -Werror=target-lifetime
> -Werror=underflow -Werror=unused-but-set-variable -Werror=unused-variable
> -Werror=unused-dummy-argument -Werror=conversion -Werror=zerotrip
> -Werror=uninitialized -Wno-maybe-uninitialized -Wuse-without-only
> -D__LIBXSMM   -D__FFTW3  -D__LIBINT -D__LIBINT_MAX_AM=6
> -D__LIBDERIV_MAX_AM1=5 -D__LIBXC -D__HAS_smm_dnn    -D__SPGLIB
> -D__JSON   -D__SHORT_FILE__="\"dbcsr_machine.F\""
> -I'/home/mozhdeh/cp2k/exts/dbcsr/src/base/' -I'/home/mozhdeh/cp2k/exts/dbcsr/src'
> dbcsr_machine.F90
> /home/mozhdeh/cp2k/exts/dbcsr/src/base/dbcsr_machine.F:77:10:
>
>        USE libxsmm, ONLY: libxsmm_timer_tick, libxsmm_timer_duration
>           1
> Fatal Error: Cannot read module file ‘libxsmm.mod’ opened at (1), because
> it was created by a different version of GNU Fortran
> compilation terminated.
> /home/mozhdeh/cp2k/exts/dbcsr/Makefile:484: recipe for target
> 'dbcsr_machine.o' failed
> make[4]: *** [dbcsr_machine.o] Error 1
> Makefile:135: recipe for target 'libdbcsr' failed
> make[3]: *** [libdbcsr] Error 2
> /home/mozhdeh/cp2k/exts/Makefile.inc:16: recipe for target 'dbcsr' failed
> make[2]: *** [dbcsr] Error 2
> make[2]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/Makefile:120: recipe for target 'ssmp' failed
> make[1]: *** [ssmp] Error 2
> make[1]: *** Waiting for unfinished jobs....
> /home/mozhdeh/cp2k/Makefile:120: recipe for target 'sopt' failed
> make[1]: *** [sopt] Error 2
> /home/mozhdeh/cp2k/Makefile:120: recipe for target 'popt' failed
> make[1]: *** [popt] Error 2
> /home/mozhdeh/cp2k/Makefile:120: recipe for target 'psmp' failed
> make[1]: *** [psmp] Error 2
> /home/mozhdeh/cp2k/Makefile:120: recipe for target 'pdbg' failed
> make[1]: *** [pdbg] Error 2
> /home/mozhdeh/cp2k/Makefile:120: recipe for target 'sdbg' failed
> make[1]: *** [sdbg] Error 2
> Makefile:115: recipe for target 'all' failed
> make: *** [all] Error 2
>
>
> On Wed, Apr 17, 2019 at 4:21 PM Mozhdeh Mohammadpour <
> mozhdehmo... at gmail.com> wrote:
>
>> ==================== Installing libvdwxc ====================
>> libvdwxc-master-429a80027a2ec2c97e2f6d9a3dc84843f2739865.tar.gz is found
>> Installing from scratch into /home/mozhdeh/cp2k/tools/
>> toolchain/install/libvdwxc-master-429a80027a2ec2c97e2f6d9a3dc848
>> 43f2739865
>> ERROR: (./scripts/install_libvdwxc.sh, line 65) Non-zero exit code
>> detected.
>>
>>
>> --
>> Mozhdeh Mohammapour
>> PhD, Physical Chemistry
>> Chemistry and chemical engineering research center of Iran
>>
>
>
> --
> Mozhdeh Mohammapour
> PhD, Physical Chemistry
> Chemistry and chemical engineering research center of Iran
>
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