How to accelerate the calculation of pdos ?
Tianshu Jiang in Beijing
jts2t... at gmail.com
Fri Sep 14 01:49:44 UTC 2018
Hi Krack, thanks for your reply.
In the attachment, bilayerIso.out is the file output by 1 core and
bilayerIsoPara.out is the file output by 12cores.
I have no idea where the problem is.
在 2018年9月12日星期三 UTC+8下午7:58:50,Matthias Krack写道:
>
> Hi Tianshu Jiang
>
> without providing the CP2K output files of your 1-core and 12-cores runs,
> it is quite unlikely that you will get any reasonable hint from someone in
> this forum.
>
> Matthias
>
> On Wednesday, 12 September 2018 04:41:07 UTC+2, Tianshu Jiang in Beijing
> wrote:
>>
>> Hi everyone in cp2k community,
>>
>> I am using cp2k to calculate the pdos of graphene, but the time spent to
>> completing the calculation when I use 1 core and 12 cores is the same.
>> The version I compile is Linux-x86-64-gfortran, and I use cp2k.psmp to
>> finish the job.
>> But from the *.out file I get that in both situation (1 core and 12
>> cores), the job finished after half an hour from beginning.
>> My question is how can I accelerate the calculation using parallel
>> computing ?
>>
>> The following is my inputfile. Thanks for your reply !
>> &GLOBAL
>> PROJECT trilayerABCIso
>> RUN_TYPE ENERGY
>> PRINT_LEVEL MEDIUM
>> &END GLOBAL
>>
>> &FORCE_EVAL
>> METHOD Quickstep
>> &DFT
>> BASIS_SET_FILE_NAME BASIS_MOLOPT
>> POTENTIAL_FILE_NAME POTENTIAL
>>
>> &POISSON
>> PERIODIC XYZ
>> &END POISSON
>> &SCF
>> SCF_GUESS ATOMIC
>> EPS_SCF 1.0E-6
>> MAX_SCF 300
>>
>> # The following settings help with convergence:
>> ADDED_MOS 100
>> CHOLESKY INVERSE
>> &SMEAR ON
>> METHOD FERMI_DIRAC
>> ELECTRONIC_TEMPERATURE [K] 300
>> &END SMEAR
>> &DIAGONALIZATION
>> ALGORITHM STANDARD
>> EPS_ADAPT 0.01
>> &END DIAGONALIZATION
>> &MIXING
>> METHOD BROYDEN_MIXING
>> ALPHA 0.2
>> BETA 1.5
>> NBROYDEN 8
>> &END MIXING
>> &END SCF
>> &XC
>> &XC_FUNCTIONAL PBE
>> &END XC_FUNCTIONAL
>> &END XC
>> &PRINT
>> &PDOS
>> # print all projected DOS available:
>> NLUMO -1
>> # split the density by quantum number:
>> COMPONENTS
>> &END
>> &E_DENSITY_CUBE ON
>> STRIDE 1 1 1
>> &END E_DENSITY_CUBE
>> &END PRINT
>> &END DFT
>>
>> &SUBSYS
>> &CELL
>> # create a hexagonal unit cell:
>> ABC [angstrom] 2.4612 2.4612 26.72
>> ALPHA_BETA_GAMMA 90. 90. 60.
>> SYMMETRY HEXAGONAL
>> PERIODIC XYZ
>> # and replicate this cell (see text):
>> MULTIPLE_UNIT_CELL 6 6 1
>> &END CELL
>> &TOPOLOGY
>> # also replicate the topology (see text):
>> MULTIPLE_UNIT_CELL 6 6 1
>> &END TOPOLOGY
>> &COORD
>> SCALED
>> # ABC stacked
>> C 1./3 1./3 0.
>> C 0. 3./3 0.
>> C 1./3 1./3 1./8
>> C 2./3 2./3 1./8
>> C 2./3 2./3 2./8
>> C 3./3 0. 2./8
>> &END
>> &KIND C
>> ELEMENT C
>> BASIS_SET TZVP-MOLOPT-GTH
>> POTENTIAL GTH-PADE-q4
>> &END KIND
>> &END SUBSYS
>>
>> &END FORCE_EVAL
>>
>>
>>
>>
>>
>>
>>
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