Unable to link ELPA201705 : Intel(R) Xeon(R) CPU E5, intel 2017.4.196 compiler
ganta.pra... at gmail.com
ganta.pra... at gmail.com
Wed May 2 13:45:55 UTC 2018
Dear Alfio Lazzaro,
Thanks a ton. I am trying to link ELPA for quite sometime and at last, it
worked after making the above suggested changes.
Once again thank you. Have a nice day.
Regards,
Prasanth,.
On Wednesday, May 2, 2018 at 2:37:08 PM UTC+2, Alfio Lazzaro wrote:
>
> Dear Prasanth,
> It is a linking problem between ELPA and LAPACK. Looking at your MKL
> linking, I think there is something wrong: your linking both sequential and
> threading.
> I used the MKL advisor (see
> https://software.intel.com/en-us/articles/intel-mkl-link-line-advisor )
> and I got the following line:
>
> ${MKLROOT}/lib/intel64/libmkl_scalapack_lp64.a -Wl,--start-group
> ${MKLROOT}/lib/intel64/libmkl_intel_lp64.a
> ${MKLROOT}/lib/intel64/libmkl_sequential.a
> ${MKLROOT}/lib/intel64/libmkl_core.a
> ${MKLROOT}/lib/intel64/libmkl_blacs_intelmpi_lp64.a -Wl,--end-group
> -lpthread -lm -ldl
>
> It can also be that you have to change the order of your library. Try to
> put ELPA library (-L$(ELPA_DIR)/lib -lelpa_openmp) before MKL.
>
> Ciao!
>
> Alfio
>
>
> Il giorno mercoledì 2 maggio 2018 14:22:58 UTC+2, ganta.... at gmail.com
> ha scritto:
>>
>> Dear CP2K team/users,
>>
>> I am trying to link ELPA 2017.05 version to CP2K 5.1 verison on Intel(R)
>> Xeon(R) CPU E5-2640 v3 @ 2.60GHz. I am using intel 2017.4.196 compiler and
>> MKL version.
>>
>> I have installed CP2K 5.1 without ELPA and I am could run simulations
>> without any issues. *But when I try to link elpa, I found following
>> errors.* Please let me know how to proceed regarding this. I have
>> attached arch file for your reference.
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_auxiliary.o):
>> In function `elpa1_auxiliary_impl_mp_elpa_invert_trm_complex_double_impl_':
>> ipo_out.c:(.text+0x6636): undefined reference to `ztrtri_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_auxiliary.o):
>> In function `elpa1_auxiliary_impl_mp_elpa_invert_trm_real_double_impl_':
>> ipo_out.c:(.text+0xc116): undefined reference to `dtrtri_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_compute_private.o):
>> In function `elpa1_compute_mp_merge_systems_double_':
>> ipo_out.c:(.text+0x18c46): undefined reference to `dlamrg_'
>>
>>
>> ipo_out.c:(.text+0x19855): undefined reference to `dlaed5_'
>>
>>
>> ipo_out.c:(.text+0x19885): undefined reference to `dlaed5_'
>>
>>
>> ipo_out.c:(.text+0x199f0): undefined reference to `dlamrg_'
>>
>>
>> ipo_out.c:(.text+0x1af4a): undefined reference to `dlamrg_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa2_compute.o):
>> In function `elpa2_compute_mp_band_band_real_double_':
>>
>> ipo_out.c:(.text+0x330a9): undefined reference to `dgeqrf_'
>>
>>
>> ipo_out.c:(.text+0x34133): undefined reference to `dgeqrf_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_auxiliary.o):
>> In function `elpa1_auxiliary_impl_mp_elpa_invert_trm_complex_double_impl_':
>> ipo_out.c:(.text+0x6636): undefined reference to `ztrtri_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_auxiliary.o):
>> In function `elpa1_auxiliary_impl_mp_elpa_invert_trm_real_double_impl_':
>> ipo_out.c:(.text+0xc116): undefined reference to `dtrtri_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_compute_private.o):
>> In function `elpa1_compute_mp_merge_systems_double_':
>> ipo_out.c:(.text+0x18c46): undefined reference to `dlamrg_'
>>
>>
>> ipo_out.c:(.text+0x19855): undefined reference to `dlaed5_'
>>
>>
>> ipo_out.c:(.text+0x19885): undefined reference to `dlaed5_'
>>
>>
>> ipo_out.c:(.text+0x199f0): undefined reference to `dlamrg_'
>>
>>
>> ipo_out.c:(.text+0x1af4a): undefined reference to `dlamrg_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa2_compute.o):
>> In function `elpa2_compute_mp_band_band_real_double_':
>>
>> ipo_out.c:(.text+0x330a9): undefined reference to `dgeqrf_'
>>
>>
>> ipo_out.c:(.text+0x34133): undefined reference to `dgeqrf_'
>>
>>
>> make[3]: ***
>> [/users/pg163/share_cp2k/cp2k-5_1-branch/cp2k/exe/intel_mkl_blas_init_xsmm_xc_elpa/cp2k_shell.psmp]
>> Error 1
>>
>> make[3]: *** Waiting for unfinished jobs....
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_auxiliary.o):
>> In function `elpa1_auxiliary_impl_mp_elpa_invert_trm_complex_double_impl_':
>> ipo_out.c:(.text+0x6636): undefined reference to `ztrtri_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_auxiliary.o):
>> In function `elpa1_auxiliary_impl_mp_elpa_invert_trm_real_double_impl_':
>> ipo_out.c:(.text+0xc116): undefined reference to `dtrtri_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa1_compute_private.o):
>> In function `elpa1_compute_mp_merge_systems_double_':
>> ipo_out.c:(.text+0x18c46): undefined reference to `dlamrg_'
>>
>>
>> ipo_out.c:(.text+0x19855): undefined reference to `dlaed5_'
>>
>>
>> ipo_out.c:(.text+0x19885): undefined reference to `dlaed5_'
>>
>>
>> ipo_out.c:(.text+0x199f0): undefined reference to `dlamrg_'
>>
>>
>> ipo_out.c:(.text+0x1af4a): undefined reference to `dlamrg_'
>>
>>
>> /users/pg163/share_cp2k/support_softwares/elpa/default-hsw-omp/lib/libelpa_openmp.a(libelpa_openmp_private_la-elpa2_compute.o):
>> In function `elpa2_compute_mp_band_band_real_double_':
>>
>> ipo_out.c:(.text+0x330a9): undefined reference to `dgeqrf_'
>>
>>
>> ipo_out.c:(.text+0x34133): undefined reference to `dgeqrf_'
>>
>>
>> make[3]: ***
>> [/users/pg163/share_cp2k/cp2k-5_1-branch/cp2k/exe/intel_mkl_blas_init_xsmm_xc_elpa/cp2k.psmp]
>> Error 1
>>
>> make[3]: ***
>> [/users/pg163/share_cp2k/cp2k-5_1-branch/cp2k/exe/intel_mkl_blas_init_xsmm_xc_elpa/libcp2k_unittest.psmp]
>> Error 1
>>
>> make[2]: *** [all] Error 2
>>
>>
>> make[1]: *** [psmp] Error 2
>>
>>
>> make: *** [all] Error 2
>>
>>
>>
>> Please let me know if you have any suggestions.
>>
>> Thanks and Regards,
>> Prasanth.
>>
>>
>>
>>
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