water in pores using TMC
drahomirko
draho... at gmail.com
Thu Jan 11 12:49:29 UTC 2018
Sirs,
I am trying to calculate the position of water molecules located in the
pore using TMC. I have modified Ice input from cp2k exercises and also went
thru the test files on TMC. Now, I have calculation running alright with
different moves and probabilities. However, I am facing problem that if I
am trying to fix the "frame" (polypeptide NTs) and want only the water to
move in pores, both molecules (WAT, PNT) are moving. I have tried to
constraint the motion of the PNT by fixing atoms through the atom list as
well as molecule name, but it is not working. Please suggest how to fix
the PNT and leave only water for MC. Thank you in advance.
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