[CP2K-user] Separate output file of umbrella integration
Wei Zhang
zwei88... at gmail.com
Fri Dec 21 14:11:16 UTC 2018
Dear all,
I'm a new cp2k user that wants to use this program to calculate PMF,
Umbrella integration (UI) is provided in the &MOTION&FREE_ENERGY section.
Here follows an example of UI in the test (cp2k/tests/Fist/regtest-6/
NaCl_fe.inp). However, after running this *inp* file, there is no output
file for the result of UI, which can only be found in the *.out file. So I
hope someone could tell how to get the output of UI as a separate file,
just like that in the METADYN method.
Best regards.
Wei Zhang
cp2k/tests/Fist/regtest-6/NaCl_fe.inp
&FORCE_EVAL
METHOD FIST
&MM
&FORCEFIELD
parm_file_name ../sample_pot/NaCl_wat.pot
parmtype CHM
&CHARGE
ATOM OT
CHARGE -0.8476
&END CHARGE
&CHARGE
ATOM HT
CHARGE 0.4238
&END CHARGE
&END FORCEFIELD
&POISSON
&EWALD
EWALD_TYPE spme
GMAX 25
ALPHA .44
NS_MAX 50
&END EWALD
&END POISSON
&END MM
&SUBSYS
&CELL
ABC 28.912 29.461 29.496
&END CELL
&TOPOLOGY
COORD_FILE_NAME ../sample_pdb/NaCl_wat.pdb
COORDINATE pdb
CONN_FILE_NAME ../sample_psf/NaCl_wat.psf
CONNECTIVITY PSF
&END TOPOLOGY
&COLVAR
&DISTANCE
ATOMS 1 2
&END
&END
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT NaCl_fe
RUN_TYPE MD
&END GLOBAL
&MOTION
&CONSTRAINT
&G3X3
DISTANCES 1.8897268 1.8897268 3.0859239
MOLECULE 3
ATOMS 1 2 3
&END G3X3
&COLLECTIVE
COLVAR 1
INTERMOLECULAR
&RESTRAINT
K 0.05
&END
&END
&END CONSTRAINT
&MD
ENSEMBLE NVE
STEPS 10
TIMESTEP 1.0
TEMPERATURE 298
&END MD
&FREE_ENERGY
METHOD UI
&UMBRELLA_INTEGRATION
&CONVERGENCE_CONTROL
EPS_CONV 0.5
COARSE_GRAINED_WIDTH 3
MAX_COARSE_GRAINED_WIDTH 3
COARSE_GRAINED_POINTS 2
&END
&UVAR
COLVAR 1
&END
&END
&END
&END MOTION
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