Core-shell model and QM/MM ECOUPL GAUSS are not compatible?
zuohen... at gmail.com
zuohen... at gmail.com
Wed Aug 22 12:58:50 UTC 2018
Hi Matt,
Thank you for your work. I am not sure if the fault is caused by my
incorrect set.
Best wishes,
Zuoheng
在 2018年8月21日星期二 UTC+2下午8:32:12,Matt W写道:
>
> Thanks for the report, I'll try and have a look.
>
> Core-shell QM-MM should be working, but has never really been tested.
>
> Matt
>
> On Tuesday, August 21, 2018 at 4:42:39 PM UTC+1, zuoh... at gmail.com
> wrote:
>>
>> Thank you for your response.
>> I am using the EWALD_TYPE SPME for MM. It is OK for MM force field.
>> However, I want to combine QM and MM and I have to specifies the type of
>> the QM - MM electrostatic coupling (ECOUPL). This is different from
>> EWALD_TYPE.
>>
>> Best wishes,
>> Zuoheng
>>
>>
>> 在 2018年8月21日星期二 UTC+2下午4:21:35,Sergey Chulkov写道:
>>>
>>> Thank you for sharing your experience.
>>>
>>> Core shell model is currently not implemented for the ewald sums. Try to
>>> use a different EWALD_TYPE, for example, SPME.
>>>
>>> Best wishes,
>>>
>>> Sergey
>>>
>>> On Tuesday, August 21, 2018 at 1:39:19 PM UTC+1, zuoh... at gmail.com
>>> wrote:
>>>>
>>>> Dear CP2Kers,
>>>>
>>>> I am using core-shell model in MM. I found a Segmentation fault during
>>>> QM/MM simulation with ECOUPL GAUSS.
>>>> I am not sure if it is a bug? or do I have to use ECOUPL NONE? (I am
>>>> using the CP2K of 6.1 version)
>>>> The attached file is the input file I used to test this fault. This is
>>>> changed from the test file of CP2K.
>>>>
>>>> The fault is following:
>>>>
>>>> Program received signal SIGSEGV: Segmentation fault - invalid memory
>>>> reference.
>>>>
>>>> Backtrace for this error:
>>>> #0 0x7FDD41DCCE08
>>>> #1 0x7FDD41DCBF90
>>>> #2 0x7FDD412C44AF
>>>> #3 0x13180AF in __qmmm_gpw_energy_MOD_qmmm_elec_with_gaussian_lr at
>>>> qmmm_gpw_energy.F:800
>>>> #4 0x131A147 in __qmmm_gpw_energy_MOD_qmmm_elec_with_gaussian_low at
>>>> qmmm_gpw_energy.F:503
>>>> #5 0x131A645 in __qmmm_gpw_energy_MOD_qmmm_elec_with_gaussian at
>>>> qmmm_gpw_energy.F:310
>>>> #6 0x131B643 in __qmmm_gpw_energy_MOD_qmmm_el_coupling at
>>>> qmmm_gpw_energy.F:197
>>>> #7 0x9E3635 in __qmmm_force_MOD_qmmm_calc_energy_force at
>>>> qmmm_force.F:160
>>>> #8 0x8015AF in __force_env_methods_MOD_force_env_calc_energy_force at
>>>> force_env_methods.F:251
>>>> #9 0x5CF918 in __md_run_MOD_qs_mol_dyn_low at md_run.F:371
>>>> #10 0x5D095E in __md_run_MOD_qs_mol_dyn at md_run.F:152
>>>> #11 0x4EF51E in __cp2k_runs_MOD_cp2k_run at cp2k_runs.F:356
>>>> #12 0x4F1D6B in __cp2k_runs_MOD_run_input at cp2k_runs.F:1103
>>>> #13 0x4DBB21 in MAIN__ at cp2k.F:281
>>>>
>>>>
>>>> ===================================================================================
>>>> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
>>>> = PID 13646 RUNNING AT ubuntu
>>>> = EXIT CODE: 139
>>>> = CLEANING UP REMAINING PROCESSES
>>>> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>>>>
>>>> ===================================================================================
>>>> YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
>>>> (signal 11)
>>>> This typically refers to a problem with your application.
>>>> Please see the FAQ page for debugging suggestions
>>>>
>>>>
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