CELL_OPT to obtain lattice parameters close to experimental values.

ganta.pra... at gmail.com ganta.pra... at gmail.com
Thu Sep 21 09:07:53 UTC 2017


Hi all,

I am trying to do cell optimization of a goethite FeOOH unit cell.  The 
lattice parameters of the considered unit cell are a=9.91340  b=3.0128, 
c=4.58 ( the same values I used in cp2k).

I have tested all three cases (direct cell opt, geo opt, MD) of the 
CELL_OPT and 

The cell optimized values are approximately a=9.33, b=3.063 c=4.179. 
*The experiment values of lattice constants are a=9.96 b=3.02  c=4.62. *

*I want to obtain the optimized values close to expt. values. *

In trail and error, I have used STESS_TENSOR NUMERICAL, I have disabled D3 
correction and I have also used zero pressure.  



Below is my input file. 
&Global                                                                     
                                                                            
                                                       
  PROJECT goethite_cellopt                                                 
                                                                            
                                                        
  RUN_TYPE CELL_OPT                                                         
                                                                            
                                                       
  PRINT_LEVEL LOW                                                           
                                                                            
                                                       
&END GLOBAL                                                                 
                                                                            
                                                       
                                                                            
                                                                            
                                                       
&FORCE_EVAL                                                                 
                                                                            
                                                       
  METHOD Quickstep                                                         
                                                                            
                                                        
  STRESS_TENSOR ANALYTICAL                                                 
                                                                            
                                                        
  &DFT                                                                     
                                                                            
                                                        
    BASIS_SET_FILE_NAME BASIS_MOLOPT                                       
                                                                            
                                                        
    POTENTIAL_FILE_NAME GTH_POTENTIALS                                     
                                                                            
                                                        
    CHARGE 0                                                               
                                                                            
                                                        
    MULTIPLICITY 1                                                         
                                                                            
                                                        
    &MGRID                                                                 
                                                                            
                                                        
      NGRIDS 5                                                             
                                                                            
                                                        
      CUTOFF 600                                                           
                                                                            
                                                        
      REL_CUTOFF 60                                                         
                                                                            
                                                       
    &END                                                                   
                                                                            
                                                        
    &QS                                                                     
                                                                            
                                                       
       METHOD GPW                                                           
                                                                            
                                                       
       EPS_DEFAULT 1.0E-12                                                 
                                                                            
                                                        
       EXTRAPOLATION ASPC                                                   
                                                                            
                                                       
       EXTRAPOLATION_ORDER 4                                               
                                                                            
                                                        
    &END                                                                   
                                                                            
                                                        
    &SCF                                                                   
                                                                            
                                                        
      SCF_GUESS ATOMIC                                                     
                                                                            
                                                        
      MAX_SCF 1500                                                         
                                                                            
                                                                            
                              
      EPS_SCF 1.0E-8                                                       
                                                                            
                                                        
      &OUTER_SCF                                                           
                                                                            
                                                        
        MAX_SCF 30                                                         
                                                                            
                                                        
        EPS_SCF 1.0E-8                                                     
                                                                            
                                                        
      &END                                                                 
                                                                            
                                                        
      ADDED_MOS  30                                                         
                                                                            
                                                       
      CHOLESKY INVERSE                                                     
                                                                            
                                                        
      &SMEAR  ON                                                           
                                                                            
                                                        
        METHOD FERMI_DIRAC                                                 
                                                                            
                                                        
        ELECTRONIC_TEMPERATURE [K] 300                                     
                                                                            
                                                        
      &END SMEAR                                                           
                                                                            
                                                        
      &DIAGONALIZATION                                                     
                                                                            
                                                        
        ALGORITHM STANDARD                                                 
                                                                            
                                                        
      &END DIAGONALIZATION                                                 
                                                                            
                                                        
      &MIXING                                                               
                                                                            
                                                       
        METHOD  BROYDEN_MIXING                                             
                                                                            
                                                        
        ALPHA   0.1                                                         
                                                                            
                                                       
        BETA    1.5                                                         
                                                                            
                                                       
        NBROYDEN 8                                                         
                                                                            
                                                        
      &END MIXING                                                           
                                                                            
                                                       
    &END SCF                                                               
                                                                            
                                                        
    &XC                                                                     
                                                                            
                                                       
      &XC_FUNCTIONAL PBE                                                   
                                                                            
                                                        
      &END XC_FUNCTIONAL                                                   
                                                                            
                                                        
      &VDW_POTENTIAL                                                       
                                                                            
                                                        
        POTENTIAL_TYPE PAIR_POTENTIAL                                       
                                                                            
                                                           
        &PAIR_POTENTIAL                                                     
                                                                            
                                                       
          PARAMETER_FILE_NAME dftd3.dat                                     
                                                                            
                                                       
          TYPE DFTD3                                                       
                                                                            
                                                        
          REFERENCE_FUNCTIONAL PBE                                         
                                                                            
                                                        
          R_CUTOFF [angstrom] 15                                           
                                                                            
                                                        
        &END                                                               
                                                                            
                                                        
      &END VDW_POTENTIAL                                                   
                                                                            
                                                        
    &END XC                                                                 
                                                                            
                                                       
  &END DFT                                                                 
                                                                            
                                                        
                                                                            
                                                                            
                                                       
  &SUBSYS                                                                   
                                                                            
                                                       
    &CELL                                                                   
                                                                            
                                                       
      ABC [angstrom] 9.91340 3.01280 4.58000                               
                                                                            
                                                        
      PERIODIC XYZ                                                         
                                                                            
                                                        
    &END CELL                                                               
                                                                            
                                                       
    &TOPOLOGY                                                               
                                                                            
                                                       
      COORD_FILE_NAME goethite_unitcell.xyz                                 
                                                                            
                                                       
      COORD_FILE_FORMAT XYZ                                                 
                                                                            
                                                       
      &CENTER_COORDINATES T                                                 
                                                                            
                                                       
      &END CENTER_COORDINATES                                               
                                                                            
                                                       
    &END                                                                   
                                                                            
                                                        
    &KIND H                                                                 
                                                                            
                                                       
      BASIS_SET DZVP-MOLOPT-SR-GTH                                         
                                                                            
                                                        
      POTENTIAL GTH-PBE-q1                                                 
                                                                            
                                                        
    &END KIND                                                               
                                                                            
                                                                            
                                                                            
                                                         &KIND Fe           
                                                                            
                                                                            
                                
      BASIS_SET DZVP-MOLOPT-SR-GTH                                         
                                                                            
                                                        
      POTENTIAL GTH-PBE-q16                                                 
                                                                            
                                                       
    &END KIND                                                               
                                                                            
                                                       
    &KIND O                                                                 
                                                                            
                                                       
      BASIS_SET DZVP-MOLOPT-SR-GTH                                         
                                                                            
                                                        
      POTENTIAL GTH-PBE-q6                                                 
                                                                            
                                                        
    &END KIND                                                               
                                                                            
                                                       
                                                                            
                                                                            
   
  &END SUBSYS                                                               
                                                                            
                                                       
&END FORCE_EVAL                                                             
                                                                            
                                                       
                                                                            
                                                                            
                                                       
&MOTION                                                                     
                                                                            
                                                       
 &CELL_OPT                                                                 
                                                                            
                                                        
   OPTIMIZER BFGS                                                           
                                                                            
                                                       
   MAX_ITER  5000                                                           
                                                                            
                                                    
   KEEP_ANGLES T 
   EXTERNAL_PRESSURE 1.01325 0 0 0 1.01325 0 0 0 1.01325                    
                                                                            
                                                                            
      
 &END                                                                       
                                                                            
                                                       
&END  


Goethite unit cell

16                                                                         
                                                                            
                                                        
Fe H O2                                                                     
                                                                            
                                                       
Fe    1.446365    0.753200    4.357412                                     
                                                                            
                                                        
Fe    8.467034    2.259600    0.222588                                     
                                                                            
                                                        
Fe    3.510335    2.259600    2.067412                                     
                                                                            
                                                        
Fe    6.403065    0.753200    2.512588                                     
                                                                            
                                                        
 H    8.912147    0.753200    2.752580                                     
                                                                            
                                                        
 H    1.001253    2.259600    1.827420                                     
                                                                            
                                                        
 H    5.957953    2.259600    0.462580                                     
                                                                            
                                                        
 H    3.955446    0.753200    4.117420                                     
                                                                            
                                                        
 O    7.940633    0.753200    1.305300                                     
                                                                            
                                                        
 O    1.972767    2.259600    3.274700                                     
                                                                            
                                                        
 O    6.929466    2.259600    3.595300                                     
                                                                            
                                                        
 O    2.983933    0.753200    0.984700                                     
                                                                            
                                                        
 O    9.400877    0.753200    3.682320                                     
                                                                            
                                                        
 O    0.512523    2.259600    0.897680                                     
                                                                            
                                                        
 O    5.469223    2.259600    1.392320                                     
                                                                            
                                                        
 O    4.444177    0.753200    3.187680        


Please let me know if you have any suggestions. 
                                          
                  


































-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20170921/6d3d4793/attachment.htm>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Goethite_unitcell.xyz
Type: chemical/x-xyz
Size: 635 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20170921/6d3d4793/attachment.xyz>


More information about the CP2K-user mailing list