RAMAN spectrum from AIMD
ION SUCH
ion.... at gcloud.ua.es
Fri Nov 17 11:33:13 UTC 2017
Dear users and developers,
My name is Ion Such and I am a recent CP2K user. I am interested in getting
raman spectra of adsorbed molecules.
As an exercise I am following one of the HOWTOs on the cp2k web: "How to
calculate infrared and Raman spectra from MD
<http://www.travis-analyzer.de/files/travis_ir_raman.pdf> with CP2K and
TRAVIS <http://www.travis-analyzer.de/>". In my case I am simulating a
molecule of para-nitroaniline in a box.
At the time of writing I have made the first Molecular Dynamics run and
have obtained the infrared spectrum and a cp2k input file for the
calculation of the polarizabilities by using TRAVIS but I run into an error
when trying to execute the polarizabilities calculation that I don't
understand and need some help to go ahead.
The error in the output file reads
MD| Molecular Dynamics Protocol
MD| Ensemble Type
REFTRAJ
MD| Number of Time Steps
2000
MD| Time Step [fs]
0.50
MD| Temperature [K]
300.00
MD| Temperature tolerance [K]
0.00
MD| Print MD information every 1
step(s)
MD| File type Print frequency[steps] File
names
MD| Coordinates 1
polarizability-pos-1.xyz
MD| Velocities 1
polarizability-vel-1.xyz
MD| Energies 1
polarizability-1.ener
MD| Dump 1
polarizability-1.restart
ROT| Rotational Analysis Info
ROT| Principal axes and moments of inertia in atomic units:
ROT| 1 2 3
ROT| EIGENVALUES 0.853999142E+06 0.406672822E+07
0.491400783E+07
ROT| X -0.022761946 -0.821027156
-0.570435187
ROT| Y 0.067435865 0.568022568
-0.820245552
ROT| Z 0.997463933 -0.057138175
0.042437378
ROT| Numer of Rotovibrational vectors: 6
Calculation of degrees of freedom
Number of atoms:
16
Number of Intramolecular constraints:
0
Number of Intermolecular constraints:
0
Invariants(translation + rotations):
3
Degrees of freedom:
45
Restraints Information
Number of Intramolecular restraints:
0
Number of Intermolecular restraints:
0
************************** Velocities initialization
**************************
Initial Temperature
300.00 K
COM velocity: 0.000000000000 -0.000000000000
0.000000000000
*******************************************************************************
*******************************************************************************
* ___
*
* / \
*
* [ABORT]
*
* \___/ CPASSERT failed
*
* |
*
* O/|
*
* /| |
*
* / \
motion/integrator.F:1541 *
*******************************************************************************
===== Routine Calling Stack =====
3 velocity_verlet
2 qs_mol_dyn_low
1 CP2K
The relevant part of the TRAVIS generated input is the following:
&MOTION
&MD
ENSEMBLE REFTRAJ
STEPS 2000
TIMESTEP 0.500000
&REFTRAJ
EVAL_ENERGY_FORCES
TRAJ_FILE_NAME polarizability_reftraj.xyz
LAST_SNAPSHOT 2001
STRIDE 1
&END REFTRAJ
&END MD
&PRINT
&RESTART
&EACH
MD 1
&END EACH
&END RESTART
&END PRINT
&END MOTION
THANKS
Ion
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