cp2k COMBINE_COLVAR/FUNCTION define exponential form function
Sun Tao
taosun... at gmail.com
Fri Jan 20 04:19:28 UTC 2017
Dear All:
I am trying to set up some collective variables in cp2k. I need to
calculate the exponential-form value of a defined collective variable,
which is the distance between certain 2 atoms, the form is as the following:
f = 1/{1 + exp([distance(i, j) - 0.5]/1.5)}
Shall I define the CV as the following?
&SUBSYS
&COLVAR
&COMBINE_COLVAR
&COLVAR
&DISTANCE
ATOMS 1 5
&END
&END COLVAR
FUNCTION 1/(1+exp((CV-0.5)/1.5))
VARIABLES CV1
ERROR_LIMIT 1.0E-8
&END
&END
&END
Or the correct form should be something else? Thanks ~
Tao
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