CI-NEB calculation: crashes
Jörg Saßmannshausen
j.sassma... at ucl.ac.uk
Mon Feb 27 22:22:57 UTC 2017
Dear all,
I am trying to do a CI-NEB calculation but after the first step the calculation
crashed which this error message:
NEB| Building initial set of coordinates. END
*******************************************************************************
BAND TYPE = CI-
NEB
BAND TYPE OPTIMIZATION =
SD
STEP NUMBER =
0
RMSD DISTANCE DEFINITION =
T
NUMBER OF NEB REPLICA =
5
DISTANCES REP = 9.750661 9.750661 9.750661
9.750661
ENERGIES [au] = -648.476382 -647.620195 -646.701277
-647.623017
-648.424927
BAND TOTAL ENERGY [au] =
-3238.84579812863058
*******************************************************************************
Trying to move ./WFN_restart.wfn.bak-1 to ./WFN_restart.wfn.bak-2.
rename returned status: -1
Problem moving file
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus
causing
the job to be terminated. The first process to do so was:
Process name: [[44988,1],192]
Exit code: 1
The SGE error files contains this:
cp2k-4.1-avx2.popt:3555 terminated with signal 6 at PC=2ad95d2c35f7
SP=7ffe9c0dbcf8.
(I have omitted the backtrace)
I am using 256 cores and this is the relevant part of my input file:
@SET BAND_TYPE NEB
&MOTION
&PRINT
&VELOCITIES OFF
&END
&END
&BAND
NPROC_REP 32
@IF ( ${BAND_TYPE} == NEB )
BAND_TYPE CI-NEB
K_SPRING 0.2
ROTATE_FRAMES T
&CI_NEB
NSTEPS_IT 5
&END
@ENDIF
@ENDIF
NUMBER_OF_REPLICA 5
&CONVERGENCE_CONTROL
MAX_FORCE 0.001
RMS_FORCE 0.0005
&END
&OPTIMIZE_BAND
OPTIMIZE_END_POINTS F
OPT_TYPE DIIS
&DIIS
MAX_STEPS 200
N_DIIS 7
NO_LS
STEPSIZE 0.5
MAX_STEPSIZE 1.0
&END
&END
&REPLICA
COORD_FILE_NAME files/start-A.xyz
&END
&REPLICA
COORD_FILE_NAME files/final-C.xyz
&END
&PROGRAM_RUN_INFO
&END
&CONVERGENCE_INFO
&END
&END BAND
&END MOTION
Could anybody point me in the right direction here? I am trying to get these
calculations done for some time now and I am still stuck. I have checked the
cluster with a different input file which I know works and so I got some
confidence it is not a cluster problem.
Anybody any ideas?
Please let me know if you need more informations.
All the best from London
Jörg
--
*************************************************************
Dr. Jörg Saßmannshausen, MRSC
University College London
Department of Chemistry
20 Gordon Street
London
WC1H 0AJ
email: j.sassma... at ucl.ac.uk
web: http://sassy.formativ.net
Please avoid sending me Word or PowerPoint attachments.
See http://www.gnu.org/philosophy/no-word-attachments.html
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