Exited with exit code 1
Cristiana Passiu
uido... at libero.it
Mon Apr 10 15:09:06 UTC 2017
Dear all,
I'm trying to run a calculation to obtain the HOMO-LUMO gap in a ZrO2
system, but the job stopped running with the messages reported below. Do
you know what they mean? I attached also my input.
Many thanks,
Cristiana
"Exited with exit code 1.
Resource usage summary:
CPU time : 32.31 sec.
Max Memory : 2127 MB
Average Memory : 2026.00 MB
Total Requested Memory : 16384.00 MB
Delta Memory : 14257.00 MB
(Delta: the difference between Total Requested Memory and Max Memory.)
Max Processes : 19
Max Threads : 52
The output (if any) follows:
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
Backtrace for this error:
Program received signal SIGSEGV: Segmentation fault - invalid memory
reference.
--------------------------------------------------------------------------
mpirun has exited due to process rank 4 with PID 30274 on
node e3221 exiting improperly. There are two reasons this could occur:
1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",
then ALL processes must call "init" prior to termination.
2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"
This may have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------"
I also obtained a series of files called "zirconia_localLog_p*.out", whose
content is as follows:
" *** Local logger file of MPI task 5 in communicator 0 ***
*** PID = 30275
*** Hostname = e3221
===== Routine Calling Stack =====
8 integrate_four_center
7 hfx_ks_matrix
6 qs_ks_build_kohn_sham_matrix
5 qs_ks_update_qs_env
4 init_scf_loop
3 scf_env_do_scf
2 qs_energies_scf
1 CP2K
zirconia_localLog_p5.out (END) "
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&GLOBAL
PROJECT zirconia
RUN_TYPE ENERGY
&END GLOBAL
&FORCE_EVAL
METHOD Quickstep
&DFT ! external data-files for basis-set, pseudo-potentials and wave-function to restart from
BASIS_SET_FILE_NAME ./basis
POTENTIAL_FILE_NAME ./potentials
RESTART_FILE_NAME ./pbe-RESTART.wfn
&MGRID
CUTOFF 400
&END MGRID
&PRINT ! HOMO-LUMO gap
&MO_CUBES
WRITE_CUBE .FALSE.
NHOMO 1
NLUMO 1
&END
&END
&SCF
EPS_SCF 1.0E-6
SCF_GUESS RESTART ! restart from an external wave-function
MAX_SCF 40
&OUTER_SCF
EPS_SCF 1.0E-6
MAX_SCF 10
&END
&OT
PRECONDITIONER FULL_ALL
ENERGY_GAP 0.01
&END OT
&END SCF
&XC ! electronic exchange
&XC_FUNCTIONAL
&PBE
SCALE_X 0.792
SCALE_C 1.0
&END
&PBE_HOLE_T_C_LR
SCALE_X 0.208
CUTOFF_RADIUS 3.5
&END
&END XC_FUNCTIONAL
&HF
FRACTION 0.208
&SCREENING
EPS_SCHWARZ 1.0E-6
SCREEN_ON_INITIAL_P TRUE
&END
&MEMORY
MAX_MEMORY 800
&END
&INTERACTION_POTENTIAL
POTENTIAL_TYPE TRUNCATED
CUTOFF_RADIUS 3.5
T_C_G_DATA ./t_c_g.dat ! external file with parameters needed to truncate the potential
&END
&END HF
&END XC
&END DFT
&SUBSYS
&CELL
ABC 7.28 7.28 10.54 ! zirconia crystal unit cell
&END CELL
&COORD
@INCLUDE 'zirconia.coord'
&END COORD
&KIND O ! external basis and pseudo-potentials for Zr and O
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q6
&END KIND
&KIND Zr
BASIS_SET DZVP-MOLOPT-SR-GTH
POTENTIAL GTH-PBE-q12
&END KIND
&END SUBSYS
&END FORCE_EVAL
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