<div dir="ltr">Dear all,<div>I'm trying to run a calculation to obtain the HOMO-LUMO gap in a ZrO2 system, but the job stopped running with the messages reported below. Do you know what they mean? I attached also my input.</div><div><br></div><div>Many thanks,</div><div>Cristiana</div><div><br></div><div>"<span style="font-variant-ligatures: no-common-ligatures; font-family: Menlo; font-size: 11px;">Exited with exit code 1.</span></div>




<style type="text/css">
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo}
p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo; min-height: 13.0px}
span.s1 {font-variant-ligatures: no-common-ligatures}
</style>



<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Resource usage summary:</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">    CPU time :               32.31 sec.</span></p>
<p class="p1"><span class="s1">    Max Memory :             2127 MB</span></p>
<p class="p1"><span class="s1">    Average Memory :         2026.00 MB</span></p>
<p class="p1"><span class="s1">    Total Requested Memory : 16384.00 MB</span></p>
<p class="p1"><span class="s1">    Delta Memory :           14257.00 MB</span></p>
<p class="p1"><span class="s1">    (Delta: the difference between Total Requested Memory and Max Memory.)</span></p>
<p class="p1"><span class="s1">    Max Processes :          19</span></p>
<p class="p1"><span class="s1">    Max Threads :            52</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">The output (if any) follows:</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Backtrace for this error:</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Backtrace for this error:</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Backtrace for this error:</span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">Program received signal SIGSEGV: Segmentation fault - invalid memory reference.</span></p><p class="p1"><span class="s1"><br></span></p><p class="p1"><span class="s1">--------------------------------------------------------------------------</span></p><p class="p1"><span class="s1">mpirun has exited due to process rank 4 with PID 30274 on</span></p><p class="p1"><span class="s1">node e3221 exiting improperly. There are two reasons this could occur:</span></p><p class="p2"><span class="s1"></span><br></p><p class="p1"><span class="s1">1. this process did not call "init" before exiting, but others in</span></p><p class="p1"><span class="s1">the job did. This can cause a job to hang indefinitely while it waits</span></p><p class="p1"><span class="s1">for all processes to call "init". By rule, if one process calls "init",</span></p><p class="p1"><span class="s1">then ALL processes must call "init" prior to termination.</span></p><p class="p2"><span class="s1"></span><br></p><p class="p1"><span class="s1">2. this process called "init", but exited without calling "finalize".</span></p><p class="p1"><span class="s1">By rule, all processes that call "init" MUST call "finalize" prior to</span></p><p class="p1"><span class="s1">exiting or it will be considered an "abnormal termination"</span></p><p class="p2"><span class="s1"></span><br></p><p class="p1"><span class="s1">This may have caused other processes in the application to be</span></p><p class="p1"><span class="s1">terminated by signals sent by mpirun (as reported here).</span></p><p class="p1"><span class="s1">




<style type="text/css">
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo}
p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo; min-height: 13.0px}
span.s1 {font-variant-ligatures: no-common-ligatures}
</style>

















</span></p><p class="p1"><span class="s1">--------------------------------------------------------------------------"</span></p><p class="p1"><span class="s1"><br></span></p><p class="p1"><span class="s1"><span style="font-family: Arial, Helvetica, sans-serif; font-size: 13px; font-variant-ligatures: normal;">I also obtained a series of files called "</span>zirconia_localLog_p*.out<span style="font-family: Arial, Helvetica, sans-serif; font-size: 13px;">", whose content is as follows:</span><br></span></p><p class="p1"><span class="s1"><span style="font-family: Arial, Helvetica, sans-serif; font-size: 13px;"><br></span></span></p><p class="p1"><span class="s1"><span style="font-family: Arial, Helvetica, sans-serif; font-size: 13px;">"</span></span><span style="font-variant-ligatures: no-common-ligatures;"> </span><span style="font-variant-ligatures: no-common-ligatures;">*** Local logger file of MPI task 5 in communicator 0 ***</span></p>




<style type="text/css">
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo}
p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo; min-height: 13.0px}
p.p3 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo; color: #ffffff}
span.s1 {font-variant-ligatures: no-common-ligatures}
span.s2 {font-variant-ligatures: no-common-ligatures; background-color: #000000}
</style>



<p class="p1"><span class="s1"> *** PID      = 30275</span></p>
<p class="p1"><span class="s1"> *** Hostname = e3221 </span></p><p class="p1"><span class="s1">                                                                                                                                             </span></p>
<p class="p1"><span class="s1"> ===== Routine Calling Stack ===== </span></p>
<p class="p2"><span class="s1"></span><br></p>
<p class="p1"><span class="s1">            8 integrate_four_center</span></p>
<p class="p1"><span class="s1">            7 hfx_ks_matrix</span></p>
<p class="p1"><span class="s1">            6 qs_ks_build_kohn_sham_matrix</span></p>
<p class="p1"><span class="s1">            5 qs_ks_update_qs_env</span></p>
<p class="p1"><span class="s1">            4 init_scf_loop</span></p>
<p class="p1"><span class="s1">            3 scf_env_do_scf</span></p>
<p class="p1"><span class="s1">            2 qs_energies_scf</span></p>
<p class="p1"><span class="s1">            1 CP2K</span></p>
<p class="p3"><span class="s2">zirconia_localLog_p5.out (END) </span><span style="font-variant-ligatures: no-common-ligatures; color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;"> </span><span style="font-variant-ligatures: no-common-ligatures; color: rgb(34, 34, 34); font-family: Arial, Helvetica, sans-serif; font-size: 13px;">"</span></p>




<style type="text/css">
p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.0px Menlo}
span.s1 {font-variant-ligatures: no-common-ligatures}
</style>


<p class="p1"><span class="s1"><br></span></p><p class="p1"><span class="s1"><br></span></p><p class="p1"><span class="s1"><br></span></p></div>