Transition State Optimization with Dimer Method
Natalie Austin
natalie... at gmail.com
Fri May 6 11:54:47 UTC 2016
Hello,
I recently attempted to calculate a transition state for CO2 dissociation
using CI-NEB. Unfortunately, the NEB did not converge after 66 steps ( It
ran once up to 32 steps then I had to resubmit it to run another 34 steps)
and so I stopped the calculation because I noticed that the MAX FORCE for
the NEB calculation was just fluctuating(see below). Would anyone be able
to indicate why this is the case? I used the same input for a located a
transition from physisorbed CO2 to chemisorbed CO2 on the same metal system
and I did not have this problem.
I did come across a case in the steps where all criteria was met except for
the MAX force as shown below:
RMS DISPLACEMENT = 0.00013 [ 0.00100]
(YES)
MAX DISPLACEMENT = 0.00225 [ 0.00300]
(YES)
RMS FORCE = 0.00025 [ 0.00100]
(YES)
MAX FORCE = 0.00407 [ 0.00300]
( NO)
So I took that structure and ran vibrational analysis on it and found that
it had 3 imaginary frequencies as shown below:
VIB| NORMAL MODES - CARTESIAN DISPLACEMENTS
VIB|
VIB| 1 2 3
VIB|Frequency (cm^-1) -374.496175 -281.692265
-60.923863
VIB|Intensities 0.000000 0.000000
0.000000
VIB|Red.Masses (a.u.) 14.024323 16.040216
53.709296
VIB|Frc consts (a.u.) -0.000706 -0.000259
-0.000002
As a previous user suggested I then tried to use the Transition State Dimer
method to see if I could guide this structure to a transition state by
providing the vectors in DIMER _VECTOR for the mode corresponding to the
state that I was looking for. I was able to locate a potential transition
state. I've providing the transition state coordinates below. Does it make
sense to use CI-NEB and reoptimize with the Transition state search in
cases where it is difficult to converge the NEB? Is this a common
occurrence? I'm just trying to make sure that I'm locating transition
states in an appropriate way.
Thanks,
Natalie
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20160506/6bdc1539/attachment.htm>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: cu43zr12_co_o_v2.inp
Type: chemical/x-gamess-input
Size: 3035 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20160506/6bdc1539/attachment.inp>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: pos_ts.inp
Type: chemical/x-gamess-input
Size: 5052 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20160506/6bdc1539/attachment-0001.inp>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: pot_ts-pos-1.xyz
Type: chemical/x-xyz
Size: 160398 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20160506/6bdc1539/attachment.xyz>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: pos_ts.out
Type: application/octet-stream
Size: 6820558 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20160506/6bdc1539/attachment.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Capture.PNG
Type: image/png
Size: 28851 bytes
Desc: not available
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20160506/6bdc1539/attachment.png>
More information about the CP2K-user
mailing list