[CP2K:4422] PLUMED patch for cp2k

Hanning Chen chenh... at gmail.com
Mon May 13 17:10:15 CEST 2013


Dear Ralph,

  Thank you so much !

Best,

Hanning


On Mon, May 13, 2013 at 3:30 AM, Ralph Koitz <ralph... at gmail.com> wrote:

> Dear Hanning Chen,
>
> Thanks for your interest in plumed and its interface to cp2k. I will be in
> touch with the plumed developers to integrate the cp2k-related
> functionality.
>
> In the meantime I have uploaded a modified version of plumed under the
> following link:
>
> https://docs.google.com/file/d/0B2fydPxv8acJRl9BdVRONHVYNEU/edit?usp=sharing
>
>
> Some brief installation instructions:
>   -- get the latest version of cp2k from the svn repository (the code and
> makefile are prepared for plumed)
>   -- unpack the plumed-1.3 archive somewhere (the metadyn.c/.h are already
> updated in that archive)
>   -- set the environment variable $plumedir to the root directory of the
> plumed distribution
>         export plumedir=/users/xyz/plumed-1.3
>   -- symlink the plumed/patches/plumedpatch_cp2k.sh into the cp2k src
> directory
>         ln -s $plumedir/patches/plumedpatch_cp2k.sh cp2k/src/
>   -- run the plumedpatch_cp2k script with parameter -patch, it should
> create a subdirectory src-plumed containing a number
>      of cpp files and a plumed.inc
>         ./plumedpatch.sh -patch
>   -- compile plumed with
>         make plumed -j ARCH=... VERSION=popt    PLUMED=yes
>   -- test and run
>
>
> And to use plumed, insert the following in the FREE_ENERGY section of a
> cp2k input file:
>      &METADYN
>           USE_PLUMED .TRUE.
>           PLUMED_INPUT_FILE ./filename.inp
>      &END METADYN
>
> So far we have only tested it with gfortran on a linux machine.
> Let me know if you have any issues.
>
> Regards,
> Ralph
>
>
>
> On Fri, May 10, 2013 at 5:31 PM, Hanning Chen <chenh... at gmail.com>wrote:
>
>> Dear CP2K developers,
>>
>>   I am interested in trying the new replica-exchange molecular dynamics
>> feature driven by PLUMED.
>>  Could someone kindly share the PLUMED patch for cp2k with me? It seems
>> to me that the official PLUMED repository does not provide the needed cp2k
>> patch file.
>>
>>   Thanks.
>>
>> Hanning
>>
>> --
>> You received this message because you are subscribed to the Google Groups
>> "cp2k" group.
>> To unsubscribe from this group and stop receiving emails from it, send an
>> email to cp2k+uns... at googlegroups.com.
>> To post to this group, send email to cp... at googlegroups.com.
>> Visit this group at http://groups.google.com/group/cp2k?hl=en.
>> For more options, visit https://groups.google.com/groups/opt_out.
>>
>>
>>
>
>  --
> You received this message because you are subscribed to the Google Groups
> "cp2k" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to cp2k+uns... at googlegroups.com.
> To post to this group, send email to cp... at googlegroups.com.
> Visit this group at http://groups.google.com/group/cp2k?hl=en.
> For more options, visit https://groups.google.com/groups/opt_out.
>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://lists.cp2k.org/archives/cp2k-user/attachments/20130513/61207ba0/attachment.html>


More information about the CP2K-user mailing list