Trouble with libopen-rte.so.4
Jana
jahodov... at gmail.com
Sun Mar 17 09:45:53 UTC 2013
Dear all,
I have managed to compile cp2k-2.3 at a supercomputer using their mklroot,
mpi and my fftw and libint but there is a problem with run while using
different nodes probably due to the old version of mpi available...so i was
sent another version compiled by another user at the same supercomputer but
the user didn't use anything default, all libs his own.
I got his binary and dynamically linked libs via cp -a so with links, but I
keep getting
> $ ldd ./bin/mpiexec
> linux-vdso.so.1 => (0x00007fff12a74000)
> libopen-rte.so.4 => not found
or
> $ ldd /storage/home/his-username/bin/mpiexec
> linux-vdso.so.1 => (0x00007fff2cdff000)
> libopen-rte.so.4 => not found
while he has at the same time
> $ ldd /home/his-username/storage/bin/mpiexec
> linux-vdso.so.1 => (0x00007fff57d33000)
> libopen-rte.so.4 => /home/his-username/CP2K/lib/libopen-rte.so.4
> (0x00007fdb28ffd000)
I changed my script for PBS so that I added the red line
> ...
> echo 'export LD_LIBRARY_PATH=/storage/home/$USER/lib' >> $go
> echo 'export PATH=/storage/home/$USER/bin:'$PATH >> $go
> echo 'echo "env:"; env' >> $go
> echo 'echo "nodes:"; cat $PBS_NODEFILE; echo libs:; ls
> /storage/home/$USER/lib; echo bin:; ls /storage/home/$USER/bin' >> $go
> echo 'export LD_LIBRARY_PATH=/storage/home/$USER/lib/libopen-rte.so.4' >>
> $go
> echo /storage/home/$USER/bin/'mpiexec --hostfile $PBS_NODEFILE -x
> LD_LIBRARY_PATH='$LD_LIBRARY_PATH' -x PATH='$PATH' cp2k.popt '$base'.in >
> '$base'.log 2>&1' >> $go
> ...
but in the logfile (using input for h2o from regtests) I keep getting
> /storage/home/mathausj/bin/mpiexec: error while loading shared libraries:
> libopen-rte.so.4: cannot open shared object file: No such file or directory
though
$ ls lib
total 15936
-rwxr-xr-x 1 mathausj meta 20323 2013-03-14 09:59 libmpi_f90.so.3
-rwxr-xr-x 1 mathausj meta 2002819 2013-03-14 09:59 libmpi_f77.so.1
-rwxr-xr-x 1 mathausj meta 10282011 2013-03-14 09:59 libmpi.so.1
-rwxr-xr-x 1 mathausj meta 4006084 2013-03-14 16:52 libopen-rte.so.4
I am sorry to bother you with this problem, but I am really clueless...
Have emailed helpdesk and the user who compiled it but none of them has
solution to this problem, if executed from that user's account, cp2k works
perfectly...
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