[CP2K:4812] Outputting cell information and fractional coordinates

Teodoro Laino teodor... at gmail.com
Wed Dec 11 13:37:02 UTC 2013


Or alternatively use directly VMD. First load an xyz and then “load in molecule” the DCD.

That’s pretty fast and not problematic.
Teo

On 11 Dec 2013, at 13:27, fxco... at gmail.com wrote:

> Hi all,
> 
> I'm running QuickStep MD of triclinic unit cells, and dealing with the trajectory is not effortless, to say the least. I have to piece together the Cartesian coordinates from a .xyz files (MOTION / PRINT / TRAJECTORY) and the cell info (MOTION / PRINT / CELL). Is there any way to print directly fractional coordinates in the trajectory file, with cell information above (like a modified XYZ format). DCD is an option, but impractical since it doesn't contain labels…
> 
> Or does someone have an existing post-processing script for this task?
> 
> Cheers,
> FX
> 
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