RESTRAINT option
Sandeep Kumar Reddy
kuma... at gmail.com
Fri Nov 18 17:16:21 UTC 2011
Dear all,
I am trying to calculate free energy using umbrella sampling.
When i am using restraint option, after wave function optimazation, it is
terminating with following error.
*** SCF run converged in 45 steps ***
Electronic density on regular grids: -24.0000073560
-0.0000073560
Core density on regular grids: 24.0000000488
0.0000000488
Total charge density on r-space grids: -0.0000073072
Total charge density g-space grids: -0.0000073072
Overlap energy of the core charge distribution:
0.00000019007040
Self energy of the core charge distribution:
-141.33094186512190
Core Hamiltonian energy:
40.50915002552838
Hartree energy:
58.68463253766369
Exchange-correlation energy:
-12.74086812588142
Dispersion energy:
-0.00168560914124
Total energy:
-54.87971284688209
outer SCF iter = 1 RMS gradient = 0.35E-05 energy =
-54.8797128469
outer SCF loop converged in 1 iterations or 1 steps
MULLIKEN POPULATION ANALYSIS
# Atom Element Kind Atomic population Net charge
1 C 1 3.733008 0.266992
2 O 2 6.308038 -0.308038
3 H 3 0.718305 0.281695
4 O 2 6.277961 -0.277961
5 O 2 6.233339 -0.233339
6 H 3 0.729348 0.270652
# Total charge 24.000000 0.000000
Electronic density on regular grids: -24.0000073560
-0.0000073560
Core density on regular grids: 24.0000000488
0.0000000488
Total charge density on r-space grids: -0.0000073072
Total charge density g-space grids: -0.0000073072
rank 0 in job 1 kamadhenu.intranet.jncasr.ac.in_36566 caused collective
abort of all ranks
exit status of rank 0: return code 174
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line
Source
cp2k.popt 00000000009EFBB7 Unknown Unknown Unknown
cp2k.popt 00000000004CD495 Unknown Unknown Unknown
cp2k.popt 000000000065D7C8 Unknown Unknown Unknown
cp2k.popt 000000000065CB72 Unknown Unknown Unknown
cp2k.popt 000000000040CDA6 Unknown Unknown Unknown
cp2k.popt 000000000040B750 Unknown Unknown Unknown
cp2k.popt 000000000040A50F Unknown Unknown Unknown
cp2k.popt 00000000004092C2 Unknown Unknown Unknown
libc.so.6 00000035FF01D8B4 Unknown Unknown Unknown
cp2k.popt 00000000004091E9 Unknown Unknown Unknown
*Input file : *
&FORCE_EVAL
METHOD Quickstep
&DFT
BASIS_SET_FILE_NAME BASIS_MOLOPT
POTENTIAL_FILE_NAME POTENTIAL
CHARGE = 0
&MGRID
CUTOFF 200
NGRIDS 5
REL_CUTOFF 40
&END MGRID
&QS
METHOD GPW
EPS_DEFAULT 1.0E-10
&END QS
&SCF
SCF_GUESS RESTART
EPS_SCF 1.0E-5
MAX_SCF 1000
# MIXING 0.3
&OUTER_SCF
EPS_SCF 1.0E-3
MAX_SCF 50
&END
&OT
MINIMIZER CG
PRECONDITIONER FULL_ALL
ENERGY_GAP 0.001
STEPSIZE 0.05
&END
&END SCF
&XC
&XC_FUNCTIONAL BLYP
&END XC_FUNCTIONAL
&vdW_POTENTIAL
DISPERSION_FUNCTIONAL PAIR_POTENTIAL
&PAIR_POTENTIAL
TYPE DFTD2
REFERENCE_FUNCTIONAL BLYP
&END PAIR_POTENTIAL
&END vdW_POTENTIAL
&XC_GRID
XC_SMOOTH_RHO NN50
XC_DERIV SPLINE2
&END
&END XC
&END DFT
&SUBSYS
&CELL
ABC 10.0 10.0 10.0
PERIODIC NONE
&END CELL
&COORD
@INCLUDE coor.xyz
&END COORD
&KIND O
BASIS_SET TZV2P-MOLOPT-GTH-q6
POTENTIAL GTH-BLYP-q6
&END KIND
&KIND C
BASIS_SET TZV2P-MOLOPT-GTH-q4
POTENTIAL GTH-BLYP-q4
&END KIND
&KIND H
BASIS_SET TZV2P-MOLOPT-GTH-q1
POTENTIAL GTH-BLYP-q1
MASS 2.016
&END KIND
&COLVAR
&DISTANCE
ATOMS 4 3
&END
&PRINT
&PROGRAM_RUN_INFO ON
&EACH
MD 1
&END
&END PROGRAM_RUN_INFO
&END PRINT
&END
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT OUT-CA-AS
RUN_TYPE MD
PRINT_LEVEL MEDIUM
&END GLOBAL
&MOTION
&CONSTRAINT
&CONSTRAINT_INFO
&EACH
MD 1
&END
&END
&COLLECTIVE
COLVAR 1
MOLECULE 1
TARGET 1.2
&RESTRAINT
K [kcalmol] 10.0
&END
&END
&END
&PRINT
&VELOCITIES
&EACH
MD 1
&END
&END
&FORCES
&EACH
MD 1
&END
&END
&END
&MD
ENSEMBLE NVT
STEPS 4000
TIMESTEP 0.5
TEMPERATURE 298.15
&THERMOSTAT
TYPE CSVR
&CSVR
TIMECON [fs] 20.
&END
&END THERMOSTAT
&END MD
&END MOTION
-----------------------
With out restraint option, MD is running with out any error. I tried many
times changing options, but it didn't work.
Can anybody help me ?
Thanks in advance.
Regards,
Sandeep
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