Dear all,<br> I am trying to calculate free energy using umbrella sampling. When i am using restraint option, after wave function optimazation, it is terminating with following error.<br><br><br> *** SCF run converged in 45 steps ***<br>
<br><br> Electronic density on regular grids: -24.0000073560 -0.0000073560<br> Core density on regular grids: 24.0000000488 0.0000000488<br> Total charge density on r-space grids: -0.0000073072<br>
Total charge density g-space grids: -0.0000073072<br><br> Overlap energy of the core charge distribution: 0.00000019007040<br> Self energy of the core charge distribution: -141.33094186512190<br>
Core Hamiltonian energy: 40.50915002552838<br> Hartree energy: 58.68463253766369<br> Exchange-correlation energy: -12.74086812588142<br>
Dispersion energy: -0.00168560914124<br><br> Total energy: -54.87971284688209<br><br> outer SCF iter = 1 RMS gradient = 0.35E-05 energy = -54.8797128469<br>
outer SCF loop converged in 1 iterations or 1 steps<br><br><br><br> MULLIKEN POPULATION ANALYSIS<br><br> # Atom Element Kind Atomic population Net charge<br> 1 C 1 3.733008 0.266992<br>
2 O 2 6.308038 -0.308038<br> 3 H 3 0.718305 0.281695<br> 4 O 2 6.277961 -0.277961<br> 5 O 2 6.233339 -0.233339<br>
6 H 3 0.729348 0.270652<br> # Total charge 24.000000 0.000000<br><br><br> Electronic density on regular grids: -24.0000073560 -0.0000073560<br>
Core density on regular grids: 24.0000000488 0.0000000488<br> Total charge density on r-space grids: -0.0000073072<br> Total charge density g-space grids: -0.0000073072<br><br>rank 0 in job 1 kamadhenu.intranet.jncasr.ac.in_36566 caused collective abort of all ranks<br>
exit status of rank 0: return code 174 <br><br><br>forrtl: severe (174): SIGSEGV, segmentation fault occurred<br>Image PC Routine Line Source <br>cp2k.popt 00000000009EFBB7 Unknown Unknown Unknown<br>
cp2k.popt 00000000004CD495 Unknown Unknown Unknown<br>cp2k.popt 000000000065D7C8 Unknown Unknown Unknown<br>cp2k.popt 000000000065CB72 Unknown Unknown Unknown<br>
cp2k.popt 000000000040CDA6 Unknown Unknown Unknown<br>cp2k.popt 000000000040B750 Unknown Unknown Unknown<br>cp2k.popt 000000000040A50F Unknown Unknown Unknown<br>
cp2k.popt 00000000004092C2 Unknown Unknown Unknown<br>libc.so.6 00000035FF01D8B4 Unknown Unknown Unknown<br>cp2k.popt 00000000004091E9 Unknown Unknown Unknown<br>
<br><br><b>Input file : </b><br><br><br> &FORCE_EVAL<br> METHOD Quickstep<br> &DFT<br> BASIS_SET_FILE_NAME BASIS_MOLOPT<br> POTENTIAL_FILE_NAME POTENTIAL<br> CHARGE = 0 <br> &MGRID<br> CUTOFF 200<br>
NGRIDS 5 <br> REL_CUTOFF 40<br> &END MGRID<br> &QS<br> METHOD GPW<br> EPS_DEFAULT 1.0E-10<br> &END QS<br> &SCF<br> SCF_GUESS RESTART <br> EPS_SCF 1.0E-5 <br>
MAX_SCF 1000<br># MIXING 0.3<br> &OUTER_SCF<br> EPS_SCF 1.0E-3<br> MAX_SCF 50<br> &END<br> &OT<br> MINIMIZER CG<br> PRECONDITIONER FULL_ALL<br> ENERGY_GAP 0.001<br>
STEPSIZE 0.05<br> &END<br> <br> &END SCF<br> &XC<br> &XC_FUNCTIONAL BLYP <br> &END XC_FUNCTIONAL<br> &vdW_POTENTIAL<br> DISPERSION_FUNCTIONAL PAIR_POTENTIAL<br>
&PAIR_POTENTIAL<br> TYPE DFTD2<br> REFERENCE_FUNCTIONAL BLYP <br> &END PAIR_POTENTIAL<br> &END vdW_POTENTIAL<br> &XC_GRID<br> XC_SMOOTH_RHO NN50<br>
XC_DERIV SPLINE2<br> &END<br> &END XC<br> &END DFT<br><br> &SUBSYS<br> &CELL <br> ABC 10.0 10.0 10.0<br> PERIODIC NONE <br> &END CELL<br><br> &COORD<br> @INCLUDE coor.xyz <br>
&END COORD<br><br> &KIND O<br> BASIS_SET TZV2P-MOLOPT-GTH-q6 <br> POTENTIAL GTH-BLYP-q6<br> &END KIND<br> <br> &KIND C<br> BASIS_SET TZV2P-MOLOPT-GTH-q4 <br> POTENTIAL GTH-BLYP-q4<br>
&END KIND<br><br> &KIND H<br> BASIS_SET TZV2P-MOLOPT-GTH-q1 <br> POTENTIAL GTH-BLYP-q1<br> MASS 2.016<br> &END KIND<br><br> &COLVAR<br> &DISTANCE<br> ATOMS 4 3 <br>
&END <br> &PRINT<br> &PROGRAM_RUN_INFO ON<br> &EACH<br> MD 1<br> &END <br> &END PROGRAM_RUN_INFO<br> &END PRINT<br> &END<br><br>
&END SUBSYS<br>&END FORCE_EVAL<br><br>&GLOBAL<br> PROJECT OUT-CA-AS <br> RUN_TYPE MD<br> PRINT_LEVEL MEDIUM<br>&END GLOBAL<br><br>&MOTION<br> &CONSTRAINT<br> &CONSTRAINT_INFO<br> &EACH<br>
MD 1<br> &END<br> &END <br> &COLLECTIVE<br> COLVAR 1 <br> MOLECULE 1 <br> TARGET 1.2 <br> &RESTRAINT<br> K [kcalmol] 10.0 <br> &END<br> &END<br>
&END<br> &PRINT<br> &VELOCITIES<br> &EACH<br> MD 1<br> &END<br> &END<br> &FORCES<br> &EACH<br> MD 1 <br> &END <br> &END<br> &END<br>
&MD<br> ENSEMBLE NVT<br> STEPS 4000 <br> TIMESTEP 0.5<br> TEMPERATURE 298.15<br> &THERMOSTAT<br> TYPE CSVR <br> &CSVR<br> TIMECON [fs] 20.<br> &END<br> &END THERMOSTAT<br>
&END MD<br>&END MOTION<br><br>-----------------------<br><br>With out restraint option, MD is running with out any error. I tried many times changing options, but it didn't work.<br>Can anybody help me ?<br>
<br>Thanks in advance.<br><br>Regards,<br>Sandeep <br>