LJ to semi-empirical

Axel akoh... at gmail.com
Thu Sep 13 16:16:43 UTC 2007


hi ivan,

how about just taking a large classical TIP3P water box
and doing a QM/MM run with a large AM1 box/cluster in it?
thanks to teo's recent efforts SE-QM/MM seems to be
working fine now. that may not get you all the way, but
i am certain that it would still be worth investigating it.
please contact me at akoh... at cmm.chem.upenn.edu, if you
want to discuss in more detail.

cheers,
   axel.

On Sep 13, 6:54 am, ivan <solt... at yahoo.com> wrote:
> Hi Teo and Juerg
>
> thanks for the quick reply. Actually, i'm absolutely new at CP2K (i've
> downloaded the code only a few days ago), so i don't have a working
> input yet. If i can't create it pretty soon, i will show up here
> again.. This option sounds great
> for me, but if (as Juerg warned me in his meassage) AM1 can not be
> used with a periodic boundary, i'm a little lost again. Thanks anyway
>
> regards
> ivan
>
> On szept. 13, 12:43, Juerg Hutter <hut... at pci.uzh.ch> wrote:
>
> > Hi
>
> > I just wanted to add that currently periodic boundary
> > conditions cannot be used with the NDDO (AM1, PM3 etc)
> > models in cp2k.
>
> > regards
>
> > Juerg
>
> > ----------------------------------------------------------
> > Juerg Hutter                   Phone : ++41 44 635 4491
> > Physical Chemistry Institute   FAX   : ++41 44 635 6838
> > University of Zurich           E-mail: hut... at pci.uzh.ch
> > Winterthurerstrasse 190
> > CH-8057 Zurich, Switzerland
> > ----------------------------------------------------------
>
> > On Thu, 13 Sep 2007, ivan wrote:
>
> > > Dear All,
>
> > > i am trying to reproduce the diffusivity (and g(r)) of a classical
> > > water model (TIP3P) with semi-empirical water (probably AM1, might be
> > > PM3). For this aim, i would like to add an artificially tuned Lennard-
> > > Jones term to the AM1 energy. Where do you think i should touch the
> > > cp2k code to do that? Many thanks in advance for any idea
>
> > > regards
> > > ivan




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