How to define molecule?
lml... at gmail.com
lml... at gmail.com
Sun May 13 00:30:37 UTC 2007
I want to print the dipole moment for each water molecular. As Joost
and Matt suggested, I try to use COORD to define molecule. When I
just calculate H2O system, everything is ok. But when the system
include Na or Cl atom, then QS can not run
&COORD
O 0.000000 0.000000 -0.065587 H2O
H 0.000000 -0.757136 0.520545 H2O
H 0.000000 0.757136 0.520545 H2O
# NA 0 0 5 NA ! with
this line, QS can not run
&END COORD
and a
&TOPOLOGY
CONNECTIVITY GENERATE
&END TOPOLOGY
How can I define molecues for the systems including NA, CL and H2O?
Thanks
Limin
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