<p>I’m running molecular dynamics simulations for a small aluminum cluster (Al₆) and tested two thermostats — <strong>CSVR</strong> and <strong>Nosé–Hoover</strong> — with different time constants: very small (5, 15 fs), moderate (200 fs), and large (400 fs).</p>
<p>A few questions came up during these tests:</p>
<ol><li>
<p>Is there any <strong>preferred choice between CSVR and Nosé–Hoover</strong> when simulating <strong>small metallic clusters</strong> (e.g., 4–6 atoms)?</p>
</li><li>
<p>With <strong>CSVR</strong>, the system temperature shows large fluctuations (often rising up to ~300 K) instead of stabilizing near the target 100 K, even with small time constants.</p>
</li><li>
<p>With <strong>Nosé–Hoover</strong>, the temperature profile is smoother and closer to equilibrium, but using <strong>very small time constants</strong> seems to make the thermostat <strong>too restrictive</strong>, potentially altering the physical nature of the MD trajectory.</p>
</li><li>
<p>On the other hand, using <strong>larger time constants (200 or 400 fs)</strong> makes it <strong>difficult for the system to reach thermal equilibrium</strong> within a reasonable simulation time.</p>
</li></ol>
<p>I have attached the <strong>resulting temperature evolution figures</strong> and the corresponding <strong><span>md.inp</span> files</strong> used for each simulation for reference.</p>
<p>Do you have any recommendations for:</p>
<ul><li>
<p>Choosing between CSVR and Nosé–Hoover for small cluster dynamics</p>
</li><li>
<p>Selecting an appropriate time constant range to balance thermal equilibration and realistic trajectory sampling</p>
</li></ul>
<p>Any advice or best practices for such small systems would be greatly appreciated.</p>
<p>Thank you!</p>
<br />
<p></p>
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