<br /><p><font face="Times New Roman">Dear Marcella,<br /></font></p>
<p><font face="Times New Roman">I have resolved the previous issue, and I sincerely appreciate your help.</font></p>
<p><font face="Times New Roman">However, I’m encountering a new problem regarding the temperature stability in my simulation. Below are the parameters I’m using:</font></p>
<font face="Times New Roman">&MD
TIMESTEP 1
TEMPERATURE 298.15
ENSEMBLE LANGEVIN
STEPS 1000
&LANGEVIN
GAMMA 0.01
NOISY_GAMMA 0.0001
&END LANGEVIN
&THERMAL_REGION
DO_LANGEVIN_DEFAULT F
&DEFINE_REGION
TEMPERATURE 298.15
DO_LANGEVIN T
LIST 1..282 377..517
NOISY_GAMMA_REGION 2.2E-4
&END DEFINE_REGION
&DEFINE_REGION
TEMPERATURE 298.15
DO_LANGEVIN T
LIST 283..376 518
NOISY_GAMMA_REGION 5E-5
&END DEFINE_REGION
&END THERMAL_REGION
&END MD
</font><p><font face="Times New Roman">The temperature in the ener file is continuously dropping, and I’m wondering how I could adjust the settings to keep it stable around 300 K.</font></p>
<p><font face="Times New Roman">I would greatly appreciate any suggestions or guidance you may have.</font></p>
<p><font face="Times New Roman">Best regards,<br />
Zhang Yichen</font></p><div class="gmail_quote"><div dir="auto" class="gmail_attr">在2025年2月22日星期六 UTC+8 16:42:13<Marcella Iannuzzi> 写道:<br/></div><blockquote class="gmail_quote" style="margin: 0 0 0 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">HI Zhang Yichen<div><br></div><div>There should be no commas in the lists of atoms</div><div>LIST 1..282, 377..517<br></div><div>Regards</div><div>Marcella</div><div><br></div><div><br><br></div><div class="gmail_quote"><div dir="auto" class="gmail_attr">On Saturday, February 22, 2025 at 7:15:11 AM UTC+1 <a href data-email-masked rel="nofollow">zhangyi...@gmail.com</a> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><p>Dear CP2K Community,</p>
<p>I am encountering an error while running a Langevin simulation in CP2K. I would appreciate your assistance in resolving this issue.</p>
<p><strong>Input File:</strong> </p><p>&GLOBAL<br> PROJECT cp2k<br> PRINT_LEVEL LOW<br> RUN_TYPE MD<br>&END GLOBAL<br><br>&MOTION<br> &MD<br> ENSEMBLE LANGEVIN<br> STEPS 200<br> TIMESTEP 1<br> TEMPERATURE 298.15<br> &LANGEVIN<br> GAMMA 0.005<br> NOISY_GAMMA 0.0001<br> &END LANGEVIN<br> &THERMAL_REGION<br> DO_LANGEVIN_DEFAULT F <br> &DEFINE_REGION<br> TEMPERATURE 298.15<br> DO_LANGEVIN T<br> LIST 1..282, 377..517<br> NOISY_GAMMA_REGION 1E-4<br> &END DEFINE_REGION<br> &DEFINE_REGION<br> TEMPERATURE 298.15<br> DO_LANGEVIN F<br> LIST 283..376, 518<br> NOISY_GAMMA_REGION 1E-6<br> &END DEFINE_REGION<br> &END THERMAL_REGION<br> &END MD<br> &GEO_OPT<br> TYPE MINIMIZATION #Search for minimum<br> KEEP_SPACE_GROUP F #If T, then space group will be detected and preserved<br> OPTIMIZER LBFGS #Can also be CG (more robust for difficult cases) or BFGS<br> &LBFGS<br> TRUST_RADIUS 0.2 #Trust radius (maximum stepsize) in Angstrom<br> MAX_H_RANK 5 #Larger values (e.g. 30) will accelerate convergence behaviour at the cost of a larger memory consumption<br> &END LBFGS<br> MAX_ITER 500 #Maximum number of geometry optimization<br> MAX_DR 3E-3 #Maximum geometry change<br> RMS_DR 1.5E-3 #RMS geometry change<br> MAX_FORCE 6E-4 #Maximum force<br> RMS_FORCE 3E-4 #RMS force<br> &END GEO_OPT<br> &PRINT<br> &TRAJECTORY<br> FORMAT xyz<br> &EACH<br> MD 1<br> &END EACH<br> &END TRAJECTORY<br> &VELOCITIES<br> &EACH<br> MD 1<br> &END EACH<br> &END VELOCITIES<br> &RESTART<br> BACKUP_COPIES 0 #Maximum number of backing up restart file, 0 means never<br> &END RESTART<br> &RESTART_HISTORY<br> &EACH<br> MD 500<br> &END EACH<br> &END RESTART_HISTORY<br> &END PRINT<br>&END MOTION<br><br>&FORCE_EVAL<br> METHOD Quickstep<br> &SUBSYS<br> &CELL<br> ABC 17.0434 14.7600 20.0000<br> ALPHA_BETA_GAMMA 90 90 90 <br> PERIODIC XYZ #Direction(s) of applied PBC (geometry aspect)<br> &END CELL<br> &COORD<br> @INCLUDE 'coord.inc'<br> &END COORD<br> &KIND Fe<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q16<br> &END KIND<br> &KIND O<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q6<br> &END KIND<br> &KIND C<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q4<br> &END KIND<br> &KIND H<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q1<br> MASS 2.0<br> &END KIND<br> &KIND N<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q5<br> &END KIND<br> &END SUBSYS<br><br> &DFT<br> UKS T <br> @SET DATAPATH /public/home/chenyicong/cp2k_data<br> POTENTIAL_FILE_NAME ${DATAPATH}/GTH_POTENTIALS <br> BASIS_SET_FILE_NAME ${DATAPATH}/BASIS_MOLOPT <br> WFN_RESTART_FILE_NAME ./RESTART.wfn<br> CHARGE 0 #Net charge<br> MULTIPLICITY 1 #Spin multiplicity<br> &QS<br> EXTRAPOLATION_ORDER 0#need test 0 1 2 3<br> EPS_PGF_ORB 1.0E-6<br> EXTRAPOLATION ASPC<br> EPS_DEFAULT 1.0E-12 #Set all EPS_xxx to values such that the energy will be correct up to this value<br> &END QS<br> &XC<br> &XC_FUNCTIONAL PBE<br> &END XC_FUNCTIONAL<br> &XC_GRID<br> XC_SMOOTH_RHO NN10<br> XC_DERIV SPLINE2_SMOOTH<br> &END XC_GRID<br> &VDW_POTENTIAL<br> POTENTIAL_TYPE PAIR_POTENTIAL<br> &PAIR_POTENTIAL<br> PARAMETER_FILE_NAME ${DATAPATH}/dftd3.dat<br> TYPE DFTD3<br> REFERENCE_FUNCTIONAL PBE<br> R_CUTOFF 10.<br> &END PAIR_POTENTIAL<br> &END VDW_POTENTIAL<br> &END XC<br> &MGRID<br> CUTOFF 400<br> NGRIDS 20<br> REL_CUTOFF 40<br> &END MGRID<br> &SCF<br> SCF_GUESS RESTART<br> MAX_SCF 100 #Maximum number of steps of inner SCF<br> EPS_SCF 1.0E-05 #Convergence threshold of density matrix of inner SCF<br> MAX_SCF_HISTORY 5<br> &OT<br> PRECONDITIONER FULL_SINGLE_INVERSE #FULL_KINETIC&FULL_SINGLE_INVERSE is also worth to try. FULL_ALL is better but quite expensive for large system<br> MINIMIZER BROYDEN #CG is worth to consider in difficult cases<br> BROYDEN_BETA 0.9<br> BROYDEN_SIGMA 0.1<br> LINESEARCH 2PNT #1D line search algorithm for CG. 2PNT is default. 3PNT is more expensive but may be better. GOLD is best but very expensive<br> &END OT<br> &OUTER_SCF<br> MAX_SCF 20 #Maximum number of steps of outer SCF<br> EPS_SCF 1.0E-05 #Convergence threshold of outer SCF<br> &END OUTER_SCF<br> &MIXING ON<br> ALPHA 0.1<br> BETA 0.5<br> &END MIXING<br> &PRINT<br> &RESTART #Note: Use "&RESTART OFF" can prevent generating .wfn file<br> FILENAME =RESTART.wfn<br> BACKUP_COPIES 0 #Maximum number of backup copies of wfn file. 0 means never<br> &END RESTART<br> &END PRINT<br> &END SCF<br> &END DFT<br><br> &PRINT<br> &FORCES ON<br> &END FORCES<br> &END PRINT<br>&END FORCE_EVAL<br></p>
<p><strong>Error Message:</strong> </p><p><img alt="WeChat21f164d341cdf7c90fcd0053d7821503.jpg" width="534px" height="267px" src="https://groups.google.com/group/cp2k/attach/161a6c379c7a6/WeChat21f164d341cdf7c90fcd0053d7821503.jpg?part=0.3&view=1"><br></p>
<p>Thank you in advance for your help.</p>
<p>Best regards,</p>
<p>Zhang Yichen</p></blockquote></div></blockquote></div>
<p></p>
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