<div>Hi,</div><div>This is the input file I am using:</div><div><br /></div><div>&FORCE_EVAL<br /><br />&PRINT<br />&FORCES<br /><br />&END FORCES<br /><br />&END PRINT<br /> METHOD Quickstep<br /> &DFT<br /> BASIS_SET_FILE_NAME BASIS_MOLOPT_UZH<br /> POTENTIAL_FILE_NAME GTH_POTENTIALS<br /> &POISSON<br /> POISSON_SOLVER PERIODIC<br /> PERIODIC XYZ<br /> &END POISSON<br /><br /> &MGRID<br /> NGRIDS 5<br /> CUTOFF 400<br /> REL_CUTOFF 80<br /><br /> &END MGRID<br /> &QS<br /> METHOD GPW<br /> EPS_PGF_ORB 1E-16<br /><br /> &END QS<br /> &SCF<br /> &SMEAR ON<br /> ELECTRONIC_TEMPERATURE 2000<br /> METHOD FERMI_DIRAC<br /> &END SMEAR<br /> ADDED_MOS 2000<br /> CHOLESKY INVERSE<br /> SCF_GUESS RESTART<br /> EPS_SCF 1.0E-6<br /> MAX_SCF 200<br /><br /> &DIAGONALIZATION ON<br /> ALGORITHM STANDARD<br /> &END DIAGONALIZATION<br /> &MIXING T<br /> METHOD BROYDEN_MIXING<br /> ALPHA 0.2<br /> BETA 1.5<br /> NBUFFER 15<br /><br /> &END MIXING<br /><br /> &END SCF<br /> &XC<br /> &XC_FUNCTIONAL PBE<br /> &END XC_FUNCTIONAL<br /> &END XC<br /><br /> &END DFT<br /> &SUBSYS<br /><br /> &TOPOLOGY<br />MULTIPLE_UNIT_CELL 4 4 4<br />COORD_FILE_FORMAT XYZ<br />COORD_FILE Ba2Y1Cu3O6_mp-1021507.xyz<br /> &END TOPOLOGY<br /> &CELL<br />MULTIPLE_UNIT_CELL 4 4 4<br /> SYMMETRY CUBIC<br /> ABC 3.886234 3.911377 11.840840<br /> PERIODIC XYZ<br /> &END CELL<br /> &KIND Ba<br /> BASIS_SET DZVP-MOLOPT-PBE-GTH-q10<br /> POTENTIAL GTH-PBE-q10<br /> &END KIND<br /> &KIND Y<br /> BASIS_SET DZVP-MOLOPT-PBE-GTH-q11<br /> POTENTIAL GTH-PBE-q11<br /> &END KIND<br /> &KIND Cu<br /> BASIS_SET DZVP-MOLOPT-PBE-GTH-q11<br /> POTENTIAL GTH-PBE-q11<br /> &END KIND<br /> &KIND O<br /> BASIS_SET DZVP-MOLOPT-PBE-GTH-q6<br /> POTENTIAL GTH-PBE-q6<br /> &END KIND<br />&PRINT<br />&CELL HIGH<br /><br />&END CELL<br />&END PRINT<br /><br /> &END SUBSYS<br /> STRESS_TENSOR ANALYTICAL<br /><br />&END FORCE_EVAL<br />&GLOBAL<br /> PROJECT BaYCuOopt<br /> RUN_TYPE CELL_OPT<br /> PRINT_LEVEL MEDIUM<br />PREFERRED_DIAG_LIBRARY SL<br /><br /> &END GLOBAL<br /><br />&MOTION<br /><br /> &CELL_OPT<br /><br /> KEEP_SYMMETRY .TRUE.<br /> OPTIMIZER BFGS<br /> KEEP_ANGLES<br /> EXTERNAL_PRESSURE 1 0 0 0 1 0 0 0 1<br /><br /> &END CELL_OPT<br /><br />&END MOTION<br /><br />Are there any mistakes here? It was working fine before introducing the restart.</div><div><br /></div><div>Niccolò <br /></div><div class="gmail_quote"><div dir="auto" class="gmail_attr">Il giorno lunedì 22 luglio 2024 alle 11:04:37 UTC+2 Krack Matthias ha scritto:<br/></div><blockquote class="gmail_quote" style="margin: 0 0 0 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
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<p class="MsoNormal"><span lang="DE-CH" style="font-size:11.0pt">Hi<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="DE-CH" style="font-size:11.0pt"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">There seems to be a problem reading the atomic coordinates. However, without further information, it is difficult to give further guidance.<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Best<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Matthias<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><u></u> <u></u></span></p>
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<div></div></div></div></div><div lang="en-CH" link="blue" vlink="purple" style="word-wrap:break-word"><div><div><div>
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<b><span style="color:black">From: </span></b><span style="color:black"><a href data-email-masked rel="nofollow">cp...@googlegroups.com</a> <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>> on behalf of Niccolò Di Eugenio <<a href data-email-masked rel="nofollow">niccolod...@gmail.com</a>><br>
<b>Date: </b>Monday, 22 July 2024 at 10:45<br>
<b>To: </b>cp2k <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>><br>
<b>Subject: </b>[CP2K:20471] CP2K Restart<u></u><u></u></span></p>
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<p class="MsoNormal" style="margin-left:36.0pt">Dear all, <u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">I am trying to restart a DFT calculation. I am currently doing so by running the .restart file instead of the .inp file, as:<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">srun /project/ML_YBCO/nic/cp2k/exe/CRAY-XC50-gcc/cp2k.psmp BaYCuOopt-1_8.restart > Ba2Y1Cu3O6_mp-1021507.out<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">However, I am getting the following error:<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">Rank 0 [Sat Jul 20 21:02:42 2024] [c0-0c0s1n3] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
<br>
Program received signal SIGABRT: Process abort signal.<br>
<br>
Backtrace for this error:<br>
#0 0x7fffeb5b849f in ???<br>
#1 0x7fffeb5b8420 in ???<br>
#2 0x7fffeb5b9a00 in ???<br>
#3 0x7fffecb8a267 in ???<br>
#4 0x7fffeca975e5 in ???<br>
#5 0x7fffecadea84 in ???<br>
#6 0x20d10af in __message_passing_MOD_mp_abort<br>
at /project/ML_YBCO/nic/cp2k/src/mpiwrap/message_passing.F:1270<br>
#7 0x20d3d24 in __base_hooks_MOD_cp_abort<br>
at /project/ML_YBCO/nic/cp2k/obj/CRAY-XC50-gcc/psmp/base_hooks.F90:76<br>
#8 0x20d3ed0 in __base_hooks_MOD_cp__a<br>
at /project/ML_YBCO/nic/cp2k/obj/CRAY-XC50-gcc/psmp/base_hooks.F90:163<br>
#9 0xba743b in __atoms_input_MOD_read_atoms_input<br>
at /project/ML_YBCO/nic/cp2k/src/atoms_input.F:122<br>
#10 0x7b82c0 in coordinate_control<br>
at /project/ML_YBCO/nic/cp2k/src/topology.F:588<br>
#11 0x7b82c0 in __topology_MOD_topology_control<br>
at /project/ML_YBCO/nic/cp2k/src/topology.F:197<br>
#12 0xa49e9c in __cp_subsys_methods_MOD_cp_subsys_create<br>
at /project/ML_YBCO/nic/cp2k/src/cp_subsys_methods.F:161<br>
#13 0x90b5fa in __qs_subsys_methods_MOD_qs_subsys_create<br>
at /project/ML_YBCO/nic/cp2k/src/qs_subsys_methods.F:98<br>
#14 0x8d2610 in __qs_environment_MOD_qs_init<br>
at /project/ML_YBCO/nic/cp2k/src/qs_environment.F:317<br>
#15 0xafbda4 in __f77_interface_MOD_create_force_env<br>
at /project/ML_YBCO/nic/cp2k/src/f77_interface.F:805<br>
#16 0x410d22 in cp2k_run<br>
at /project/ML_YBCO/nic/cp2k/src/start/cp2k_runs.F:314<br>
#17 0x41464e in __cp2k_runs_MOD_run_input<br>
at /project/ML_YBCO/nic/cp2k/src/start/cp2k_runs.F:983<br>
#18 0x40b4c6 in cp2k<br>
at /project/ML_YBCO/nic/cp2k/src/start/cp2k.F:379<br>
#19 0x40988c in main<br>
at /project/ML_YBCO/nic/cp2k/obj/CRAY-XC50-gcc/psmp/cp2k.F90:44<br>
srun: error: nid00007: task 0: Aborted<br>
srun: launch/slurm: _step_signal: Terminating StepId=1303919.0<br>
slurmstepd: error: *** STEP 1303919.0 ON nid00007 CANCELLED AT 2024-07-20T21:02:43 ***<br>
srun: error: nid00007: task 1: Terminated<br>
srun: error: nid00008: tasks 2-3: Terminated<br>
srun: Force Terminated StepId=1303919.0<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">How could I solve this? Thank you very much.<u></u><u></u></p>
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