<div>Hi,</div><div>This is the input file I am using:</div><div><br /></div><div>&FORCE_EVAL<br /><br />&PRINT<br />&FORCES<br /><br />&END FORCES<br /><br />&END PRINT<br />  METHOD Quickstep<br />  &DFT<br />    BASIS_SET_FILE_NAME BASIS_MOLOPT_UZH<br />    POTENTIAL_FILE_NAME GTH_POTENTIALS<br />     &POISSON<br />                POISSON_SOLVER PERIODIC<br />                PERIODIC XYZ<br />                &END POISSON<br /><br /> &MGRID<br />      NGRIDS 5<br />      CUTOFF 400<br />                REL_CUTOFF 80<br /><br />    &END MGRID<br />    &QS<br />      METHOD GPW<br />      EPS_PGF_ORB 1E-16<br /><br />    &END QS<br />    &SCF<br />      &SMEAR ON<br />      ELECTRONIC_TEMPERATURE 2000<br />      METHOD FERMI_DIRAC<br />      &END SMEAR<br />      ADDED_MOS 2000<br />      CHOLESKY INVERSE<br />      SCF_GUESS RESTART<br />      EPS_SCF 1.0E-6<br />      MAX_SCF 200<br /><br />      &DIAGONALIZATION  ON<br />              ALGORITHM STANDARD<br />            &END DIAGONALIZATION<br />            &MIXING  T<br />                    METHOD BROYDEN_MIXING<br />                    ALPHA 0.2<br />                                    BETA 1.5<br />                    NBUFFER 15<br /><br />                   &END MIXING<br /><br />    &END SCF<br />    &XC<br />      &XC_FUNCTIONAL PBE<br />      &END XC_FUNCTIONAL<br />    &END XC<br /><br />  &END DFT<br />  &SUBSYS<br /><br />    &TOPOLOGY<br />MULTIPLE_UNIT_CELL 4 4 4<br />COORD_FILE_FORMAT XYZ<br />COORD_FILE Ba2Y1Cu3O6_mp-1021507.xyz<br />    &END TOPOLOGY<br />    &CELL<br />MULTIPLE_UNIT_CELL 4 4 4<br />    SYMMETRY CUBIC<br />      ABC 3.886234 3.911377 11.840840<br />      PERIODIC XYZ<br />    &END CELL<br />    &KIND Ba<br />        BASIS_SET DZVP-MOLOPT-PBE-GTH-q10<br />        POTENTIAL GTH-PBE-q10<br />      &END KIND<br />      &KIND Y<br />        BASIS_SET DZVP-MOLOPT-PBE-GTH-q11<br />        POTENTIAL GTH-PBE-q11<br />      &END KIND<br />      &KIND Cu<br />        BASIS_SET DZVP-MOLOPT-PBE-GTH-q11<br />        POTENTIAL GTH-PBE-q11<br />      &END KIND<br />      &KIND O<br />        BASIS_SET DZVP-MOLOPT-PBE-GTH-q6<br />        POTENTIAL GTH-PBE-q6<br />      &END KIND<br />&PRINT<br />&CELL HIGH<br /><br />&END CELL<br />&END PRINT<br /><br />  &END SUBSYS<br />  STRESS_TENSOR ANALYTICAL<br /><br />&END FORCE_EVAL<br />&GLOBAL<br />  PROJECT     BaYCuOopt<br />  RUN_TYPE    CELL_OPT<br />  PRINT_LEVEL MEDIUM<br />PREFERRED_DIAG_LIBRARY SL<br /><br />  &END GLOBAL<br /><br />&MOTION<br /><br />                &CELL_OPT<br /><br />                KEEP_SYMMETRY .TRUE.<br />                OPTIMIZER BFGS<br />                KEEP_ANGLES<br />                EXTERNAL_PRESSURE 1 0 0 0 1 0 0 0 1<br /><br />                &END CELL_OPT<br /><br />&END MOTION<br /><br />Are there any mistakes here? It was working fine before introducing the restart.</div><div><br /></div><div>Niccolò                                                                                                                                                                                                                                                                                                                                                                                                                                                            <br /></div><div class="gmail_quote"><div dir="auto" class="gmail_attr">Il giorno lunedì 22 luglio 2024 alle 11:04:37 UTC+2 Krack Matthias ha scritto:<br/></div><blockquote class="gmail_quote" style="margin: 0 0 0 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">





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<p class="MsoNormal"><span lang="DE-CH" style="font-size:11.0pt">Hi<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="DE-CH" style="font-size:11.0pt"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">There seems to be a problem reading the atomic coordinates. However, without further information, it is difficult to give further guidance.<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Best<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt">Matthias<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt"><u></u> <u></u></span></p>
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<b><span style="color:black">From: </span></b><span style="color:black"><a href data-email-masked rel="nofollow">cp...@googlegroups.com</a> <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>> on behalf of Niccolò Di Eugenio <<a href data-email-masked rel="nofollow">niccolod...@gmail.com</a>><br>
<b>Date: </b>Monday, 22 July 2024 at 10:45<br>
<b>To: </b>cp2k <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>><br>
<b>Subject: </b>[CP2K:20471] CP2K Restart<u></u><u></u></span></p>
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<p class="MsoNormal" style="margin-left:36.0pt">Dear all, <u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">I am trying to restart a DFT calculation. I am currently doing so by running the .restart file instead of the .inp file, as:<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">srun /project/ML_YBCO/nic/cp2k/exe/CRAY-XC50-gcc/cp2k.psmp BaYCuOopt-1_8.restart > Ba2Y1Cu3O6_mp-1021507.out<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">However, I am getting the following error:<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">Rank 0 [Sat Jul 20 21:02:42 2024] [c0-0c0s1n3] application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0<br>
<br>
Program received signal SIGABRT: Process abort signal.<br>
<br>
Backtrace for this error:<br>
#0  0x7fffeb5b849f in ???<br>
#1  0x7fffeb5b8420 in ???<br>
#2  0x7fffeb5b9a00 in ???<br>
#3  0x7fffecb8a267 in ???<br>
#4  0x7fffeca975e5 in ???<br>
#5  0x7fffecadea84 in ???<br>
#6  0x20d10af in __message_passing_MOD_mp_abort<br>
        at /project/ML_YBCO/nic/cp2k/src/mpiwrap/message_passing.F:1270<br>
#7  0x20d3d24 in __base_hooks_MOD_cp_abort<br>
        at /project/ML_YBCO/nic/cp2k/obj/CRAY-XC50-gcc/psmp/base_hooks.F90:76<br>
#8  0x20d3ed0 in __base_hooks_MOD_cp__a<br>
        at /project/ML_YBCO/nic/cp2k/obj/CRAY-XC50-gcc/psmp/base_hooks.F90:163<br>
#9  0xba743b in __atoms_input_MOD_read_atoms_input<br>
        at /project/ML_YBCO/nic/cp2k/src/atoms_input.F:122<br>
#10  0x7b82c0 in coordinate_control<br>
        at /project/ML_YBCO/nic/cp2k/src/topology.F:588<br>
#11  0x7b82c0 in __topology_MOD_topology_control<br>
        at /project/ML_YBCO/nic/cp2k/src/topology.F:197<br>
#12  0xa49e9c in __cp_subsys_methods_MOD_cp_subsys_create<br>
        at /project/ML_YBCO/nic/cp2k/src/cp_subsys_methods.F:161<br>
#13  0x90b5fa in __qs_subsys_methods_MOD_qs_subsys_create<br>
        at /project/ML_YBCO/nic/cp2k/src/qs_subsys_methods.F:98<br>
#14  0x8d2610 in __qs_environment_MOD_qs_init<br>
        at /project/ML_YBCO/nic/cp2k/src/qs_environment.F:317<br>
#15  0xafbda4 in __f77_interface_MOD_create_force_env<br>
        at /project/ML_YBCO/nic/cp2k/src/f77_interface.F:805<br>
#16  0x410d22 in cp2k_run<br>
        at /project/ML_YBCO/nic/cp2k/src/start/cp2k_runs.F:314<br>
#17  0x41464e in __cp2k_runs_MOD_run_input<br>
        at /project/ML_YBCO/nic/cp2k/src/start/cp2k_runs.F:983<br>
#18  0x40b4c6 in cp2k<br>
        at /project/ML_YBCO/nic/cp2k/src/start/cp2k.F:379<br>
#19  0x40988c in main<br>
        at /project/ML_YBCO/nic/cp2k/obj/CRAY-XC50-gcc/psmp/cp2k.F90:44<br>
srun: error: nid00007: task 0: Aborted<br>
srun: launch/slurm: _step_signal: Terminating StepId=1303919.0<br>
slurmstepd: error: *** STEP 1303919.0 ON nid00007 CANCELLED AT 2024-07-20T21:02:43 ***<br>
srun: error: nid00007: task 1: Terminated<br>
srun: error: nid00008: tasks 2-3: Terminated<br>
srun: Force Terminated StepId=1303919.0<u></u><u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">How could I solve this? Thank you very much.<u></u><u></u></p>
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</div></div></div></div><div lang="en-CH" link="blue" vlink="purple" style="word-wrap:break-word"><div><div><div><p class="MsoNormal" style="margin-left:36.0pt">-- <br>
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