My metadynamics is not running properly <br />Please check my input file<br /><br />&GLOBAL<br /> PROJECT 1a<br /> RUN_TYPE MD<br /> PRINT_LEVEL MEDIUM<br />&END GLOBAL<br /><br />#&EXT_RESTART<br />#RESTART_FILE_NAME 1a-1.restart<br />#&END EXT_RESTART<br /><br />&MOTION<br /> &MD<br /> ENSEMBLE NVT # ENSEMBLE NVE<br /> STEPS 200000<br /> TIMESTEP 1.0<br /> TEMPERATURE 295.0<br /> &THERMOSTAT<br /> &NOSE<br /> LENGTH 3 # 3 is the default<br /> MTS 2 # 2 is the default<br /> TIMECON 300.0<br /> YOSHIDA 3 # 3 is the default<br /> &END NOSE<br /> &END THERMOSTAT<br /> &END MD<br /> <br /> &FREE_ENERGY<br /> &METADYN<br /> DO_HILLS<br /> NT_HILLS 100<br /> WW 3.0e-3<br /><br /><br /> &METAVAR<br /> SCALE 0.3<br /> COLVAR 1<br /><br /> &WALL<br /> POSITION [angstrom] 4.0<br /> TYPE QUADRATIC<br /> &QUADRATIC<br /> DIRECTION WALL_PLUS<br /> K [kcalmol] 150<br /> &END QUADRATIC<br /><span style="white-space: pre;"> </span>&END WALL<br /> &END METAVAR<br /><br /> &PRINT<br /> &COLVAR<br /> COMMON_ITERATION_LEVELS 3<br /> &EACH<br /> MD 1<br /> &END<br /> &END<br /> &END<br /> &END METADYN<br /> &END<br /><br /><br /> &PRINT<br /> &RESTART_HISTORY<br /> &EACH<br /> MD 100<br /> &END<br /> &END RESTART_HISTORY<br /> &VELOCITIES<br /> &EACH<br /> MD 1<br /> &END<br /> &END<br /> # Normal restart file<br /> &RESTART<br /> &EACH<br /> MD 1<br /> &END<br /> &END RESTART<br /> &END PRINT<br />&END MOTION<br /><br />&FORCE_EVAL<br /> METHOD Quickstep ! Electronic structure method (DFT,...)<br /> &DFT<br /> CHARGE = 0<br /> MULTIPLICITY = 2<br /> LSD<br /> BASIS_SET_FILE_NAME BASIS_SET.txt<br /> POTENTIAL_FILE_NAME POTENTIAL.txt<br /> # if WFN restart is required<br /> WFN_RESTART_FILE_NAME 1a-RESTART.wfn<br /> &MGRID<br /> #CUTOFF 1000<br /> CUTOFF 300<br /> NGRIDS 4<br /> REL_CUTOFF 60<br /> &END MGRID<br /> &QS<br /> METHOD PM6<br /> EPS_DEFAULT 1.0E-10 # 1.0E-10 is the default<br /> &END QS<br /> &SCF<br /> SCF_GUESS RESTART<br /> EPS_SCF 1.0E-5 # 1.0E-5 is the default<br /> MAX_SCF 600 # 50 is the default<br /> &OT<br /> MINIMIZER CG<br /> PRECONDITIONER FULL_ALL<br /> LINESEARCH 3PNT<br /> &END<br /> &OUTER_SCF<br /> EPS_SCF 1.0E-5 # 1.0E-5 is the default<br /> MAX_SCF 20 # Keep > 100 when OT is on<br /> &END<br /> &END SCF <br /> &XC<br /> &XC_FUNCTIONAL BLYP<br /> &END XC_FUNCTIONAL<br /> &vdW_POTENTIAL<br /> DISPERSION_FUNCTIONAL PAIR_POTENTIAL # POTENTIAL_TYPE is alias to DISPERSION_FUNCTIONAL<br /> &PAIR_POTENTIAL<br /> TYPE DFTD3<br /> PARAMETER_FILE_NAME dftd3.dat<br /> REFERENCE_FUNCTIONAL PBE<br /> &END PAIR_POTENTIAL<br /> &END vdW_POTENTIAL<br /> &END XC<br /> &POISSON ! Solver requested for non periodic calculations<br /> PERIODIC XYZ ! Type of solver<br /> &END POISSON<br /> &END DFT <br /> &SUBSYS<br /> &CELL<br /> <span style="white-space: pre;"> </span>A 20.0000000 0.00000000 0.00000000<br /> <span style="white-space: pre;"> </span>B 0.00000000 20.0000000 0.00000000<br /> <span style="white-space: pre;"> </span>C 0.00000000 0.00000000 20.00000000<br /><br /> PERIODIC XYZ ! Non periodic calculations. That's why the POISSON section is needed <br /> &END CELL<br /> &TOPOLOGY ! Section used to center the atomic coordinates in the given box. Useful for big molecules<br /> COORD_FILE_FORMAT xyz<br /> COORD_FILE_NAME 1a.xyz<br /> &END<br /> &KIND H<br /> ELEMENT H<br /> BASIS_SET DZVP-GTH-BLYP<br /> POTENTIAL GTH-BLYP-q1<br /> &END KIND <br /> &KIND O<br /> ELEMENT O<br /> BASIS_SET DZVP-GTH-BLYP<br /> POTENTIAL GTH-BLYP-q6<br /> &END KIND <br /> &KIND C<br /> ELEMENT C<br /> BASIS_SET DZVP-GTH-BLYP<br /> POTENTIAL GTH-BLYP-q4<br /> &END KIND <br /> &KIND Cl<br /> ELEMENT Cl<br /> BASIS_SET DZVP-GTH-BLYP<br /> POTENTIAL GTH-BLYP-q7<br /> &END KIND <br /><br /> &COLVAR<br /> &DISTANCE<br /> ATOMS 2 5<br /> &END DISTANCE<br /> &END COLVAR<br /> &END SUBSYS<br />&END FORCE_EVAL<br /><br /><br />
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