Dear Dr. Matthias, <br><br>Do you have an ARCH file for this build that you could point me to? I would like to build using the same settings to test at ORNL.<br><br>Sincerely,<div>Matthew S. Emerson<br><br></div><div class="gmail_quote"><div dir="auto" class="gmail_attr">On Wednesday, September 21, 2022 at 4:00:21 AM UTC-5 Matthias Krack wrote:<br/></div><blockquote class="gmail_quote" style="margin: 0 0 0 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
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<p class="MsoNormal"><span lang="EN-US">Hello Matthew<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US">I have run your case on our local compute cluster with CP2K v2022.1 (gnu 11.2.0, OpenMPI 4.1.3) using 144 CPU cores. I observe only a small increase in memory usage after the usual initial
growth during the first MD steps (see attached plot).<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US">Best regards<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US">Matthias<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span lang="EN-US"><img width="1121" height="792" style="width:11.677in;min-height:8.25in" src="https://groups.google.com/u/1/group/cp2k/attach/a097b166e21e3/image001.png?part=0.1&view=1"></span><span lang="EN-US"><u></u><u></u></span></p></div></div><div lang="en-CH" link="blue" vlink="purple" style="word-wrap:break-word"><div>
<p class="MsoNormal"><span lang="EN-US"><u></u> <u></u></span></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><b><span style="font-size:12.0pt;color:black">From:
</span></b><span style="font-size:12.0pt;color:black">"<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>" <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>> on behalf of Matthew Emerson <<a href data-email-masked rel="nofollow">mr...@uiowa.edu</a>><br>
<b>Reply to: </b>"<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>" <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>><br>
<b>Date: </b>Tuesday, 20 September 2022 at 23:21<br>
<b>To: </b>"<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>" <<a href data-email-masked rel="nofollow">cp...@googlegroups.com</a>><br>
<b>Subject: </b>[CP2K:17721] Possible Memory Leak<u></u><u></u></span></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">Dear CP2K Developers/Community, <u></u>
<u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt"><u></u> <u></u></p>
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<p class="MsoNormal" style="margin-left:36.0pt">I have attached an input file which I believe shows an example of a possible memory leak in CP2K. It is a typical NVT DFT simulation of molten MgCl2 with PBE-D3 dispersion corrections. <u></u><u></u></p>
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<p style="margin-left:36.0pt">I have tried well-tested CP2K builds on our local cluster (v6.1, v8.1, v2022.1), our university supercomputer (v6.1, v8.1), and even the system-wide installations of CP2K on Cori at Oak Ridge National Lab (v8.1 and v9.1) and memory
usage grows linear with time until either the node locks up/dies from insufficient memory usage or the job dies from maximum walltime (ORNL). I've done enough testing that I can almost tell how many MD steps before the job will die for a given machine with
X amount of RAM and Y amount of MPI ranks. <br>
<br>
I normally wouldn’t email about things like this but I’ve tried multiple combinations (w/unit-testing) of GCC, OpenMPI, OpenBLAS/MKL, etc. and nothing seems to work. I am hoping this is simply an input file issue or my own error.<u></u><u></u></p>
<p style="margin-left:36.0pt"><u></u> <u></u></p>
<p style="margin-left:36.0pt">Any help will be much appreciated.<br>
<br>
Matthew S. Emerson<br>
Margulis Research Group<br>
Department of Chemistry<br>
The University of Iowa<u></u><u></u></p>
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