<p>Hi everyone,
I hope you are all doing fine.</p>
<p>CP2K is
completely new for me, and it is proving to be a challenge. I am attempting to simulate
liquid DMSO (a simple molecule with 10 atoms) just as a test. So far, I have tried
to build my input based on tutorials simulating liquid water and tweaking it
for DMSO.</p>
<p>The
calculation is running fine and converging quite smoothly but looking at the DMSO-pos-1.xyz
file that’s being generated I can see that the atoms are barely shaking. I’m
attaching (and showing below) my input and the xyz file. Any help would be much
appreciated.</p>
<p>Thanks in
advance.</p>
<p>Vvvvvvvvvvvvvvvvvvvvvvvvvv
INPUT vvvvvvvvvvvvvvvvvvvvvvvvvv</p><p>&GLOBAL<br> PROJECT DMSO<br> RUN_TYPE MD <br>&END GLOBAL<br><br>&FORCE_EVAL<br> METHOD Quickstep<br> &DFT<br> BASIS_SET_FILE_NAME GTH_BASIS_SETS<br> POTENTIAL_FILE_NAME GTH_POTENTIALS <br> CHARGE 0<br> MULTIPLICITY 1<br><br> &MGRID<br> CUTOFF [Ry] 400 <br> &END<br><br> &QS<br> METHOD GPW <br> EPS_DEFAULT 1.0E-10 <br> EXTRAPOLATION ASPC <br> &END<br><br> &POISSON<br> PERIODIC XYZ ! the default, gas phase systems should have 'NONE' and a wavelet solver<br> &END<br><br> &PRINT<br> &E_DENSITY_CUBE OFF<br> &END E_DENSITY_CUBE<br> &MO_CUBES<br> NLUMO 4<br> NHOMO 4<br> WRITE_CUBE .FALSE.<br> &EACH<br> MD 10<br> &END<br> &END<br> &END<br><br> &SCF <br> SCF_GUESS ATOMIC <br> MAX_SCF 500<br> EPS_SCF 1.0E-6 <br> &OT<br> PRECONDITIONER FULL_SINGLE_INVERSE<br> MINIMIZER DIIS<br> &END OT<br> &OUTER_SCF ! repeat the inner SCF cycle 10 times<br> MAX_SCF 10<br> EPS_SCF 1.0E-6<br> &END<br> &PRINT<br> &RESTART OFF<br> &END<br> &END<br> &END SCF<br><br> &XC<br> &XC_FUNCTIONAL <br> &PBE<br> &END<br> &END XC_FUNCTIONAL<br> ! adding Grimme's D3 correction (by default without C9 terms) <br> &VDW_POTENTIAL<br> POTENTIAL_TYPE PAIR_POTENTIAL <br> &PAIR_POTENTIAL<br> PARAMETER_FILE_NAME dftd3.dat<br> TYPE DFTD3<br> REFERENCE_FUNCTIONAL PBE<br> R_CUTOFF [angstrom] 16<br> &END<br> &END VDW_POTENTIAL<br> &END XC<br> &END DFT<br> <br> &SUBSYS<br> &CELL <br> ABC [angstrom] 9.0 9.0 9.0<br> &END CELL<br><br> &TOPOLOGY<br> COORD_FILE_NAME DMSOcaixa.xyz<br> COORD_FILE_FORMAT XYZ<br> &END<br><br> &KIND H <br> BASIS_SET DZVP-MOLOPT-SR-GTH <br> POTENTIAL GTH-PBE-q1 <br> &END KIND<br> &KIND C<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q4<br> &END KIND<br> &KIND O<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q6<br> &END KIND<br> &KIND S<br> BASIS_SET DZVP-MOLOPT-SR-GTH<br> POTENTIAL GTH-PBE-q6<br> &END KIND<br> &END SUBSYS<br>&END FORCE_EVAL<br><br>! how to propagate the system, selection via RUN_TYPE in the &GLOBAL section<br>&MOTION<br> &PRINT<br> &TRAJECTORY<br> &EACH<br> MD 1<br> &END EACH<br> &END TRAJECTORY<br> &VELOCITIES OFF<br> &END VELOCITIES<br> &FORCES OFF<br> &END FORCES<br> &RESTART_HISTORY<br> &EACH<br> MD 500<br> &END EACH<br> &END RESTART_HISTORY<br> &RESTART<br> BACKUP_COPIES 3<br> &EACH<br> MD 1<br> &END EACH<br> &END RESTART<br> &END PRINT<br> &GEO_OPT<br> OPTIMIZER BFGS ! Good choice for 'small' systems (use LBFGS for large systems)<br> MAX_ITER 100<br> MAX_DR [bohr] 0.003 ! adjust target as needed<br> &BFGS<br> &END<br> &END<br> &MD<br> ENSEMBLE NVT ! sampling the canonical ensemble, accurate properties might need NVE<br> TEMPERATURE [K] 300<br> TIMESTEP [fs] 0.5<br> STEPS 1000<br> # GLE thermostat as generated at http://epfl-cosmo.github.io/gle4md <br> # GLE provides an effective NVT sampling.<br> &THERMOSTAT<br> REGION MASSIVE<br> TYPE GLE<br> &GLE<br> NDIM 5<br> A_SCALE [ps^-1] 1.00<br> A_LIST 1.859575861256e+2 2.726385349840e-1 1.152610045461e+1 -3.641457826260e+1 2.317337581602e+2<br> A_LIST -2.780952471206e-1 8.595159180871e-5 7.218904801765e-1 -1.984453934386e-1 4.240925758342e-1<br> A_LIST -1.482580813121e+1 -7.218904801765e-1 1.359090212128e+0 5.149889628035e+0 -9.994926845099e+0<br> A_LIST -1.037218912688e+1 1.984453934386e-1 -5.149889628035e+0 2.666191089117e+1 1.150771549531e+1<br> A_LIST 2.180134636042e+2 -4.240925758342e-1 9.994926845099e+0 -1.150771549531e+1 3.095839456559e+2<br> &END GLE<br> &END THERMOSTAT<br> &END<br>&END<br></p>
<p></p>
-- <br />
You received this message because you are subscribed to the Google Groups "cp2k" group.<br />
To unsubscribe from this group and stop receiving emails from it, send an email to <a href="mailto:cp2k+unsubscribe@googlegroups.com">cp2k+unsubscribe@googlegroups.com</a>.<br />
To view this discussion on the web visit <a href="https://groups.google.com/d/msgid/cp2k/a2fd7fc0-1840-42b4-b61c-430f2f38919en%40googlegroups.com?utm_medium=email&utm_source=footer">https://groups.google.com/d/msgid/cp2k/a2fd7fc0-1840-42b4-b61c-430f2f38919en%40googlegroups.com</a>.<br />