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<div>Dear all</div><div><br></div><div>I am interested in studying the structural, electronic, and optical properties of periodic systems. I
used to calculate the gas phase using Gaussian software. Now for the first time, I want to calculate in solid-state by cp2k. I have got some basic questions about periodic calculations. Please forgive me if I am asking very general questions, and so many....!<br></div><div><br></div><div>I want to start from the crystal X-ray structure...you can see it in the attached file!</div><div><br></div><div>1)
Can I replace some of its atoms with arbitrary atoms? for example F
atom instead of H atom... If I can, I must do calculations by cell-opt
run type??? or geo-opt is also good?!
</div><div><br></div><div> 2) As you see in the attached file, in my x-ray unit cell, there are some atoms outside of the box.
<span lang="en"><span><span>Should such atoms be deleted before converting the CIF file to XYZ format? or not?</span></span></span></div><div><span lang="en"><span><span><br></span></span></span></div><div><span lang="en"><span><span>3)
<span lang="en"><span><span>Can this structure be investigated in 2D?<br></span></span></span></span></span></span></div><div><span lang="en"><span><span><br></span></span></span></div><div><span lang="en"><span><span>4)
<span lang="en"><span><span>If I want to investigate the electronic and
optical properties of this structure, can I use the single unit
cell or should it be in the form of a supercell? Are the properties of
the unit cell and supercell different?</span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span><br></span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span>5)
<span lang="en"><span><span>There is an important physical concept in the solid-state called k point!
<span lang="en"><span><span>Is it necessary to enter its keyword ?! or it is set by default...I don't know?
<span lang="en"><span><span>Do you think I should enter it in the input file?</span></span></span> whether unit-cell or supercell!</span></span></span></span></span></span></span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span> <br></span></span></span></span></span></span></span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><br></span></span></span></span></span></span></span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span>
<span> <span><span>I am very sincerely eager to get an answer?</span></span> <span><span>please.</span></span></span> <br></span></span></span></span></span></span></span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><br></span></span></span></span></span></span></span></span></span></span></span></span></div><div><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span><span lang="en"><span><span>Thanks a lot for helping</span></span></span></span></span></span></span></span></span></span></span></span></div>
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