Dear
Manjusha,<div>If I understand well, the time per MD step should correspond to the times that I'm reporting divided by 100. </div><div><br></div><div>Dear Fabian,</div><div>Thanks a lot for the information. I will check the use of 25 cores instead of 28. I'm using 28 since our nodes have 28 cores each.</div><div><br></div><div>Is this scaling the related to the xTB method or is it linked to its current implementation on CP2K? Can the linear scaling approach improve the situation?</div><div><br></div><div>Thanks a lot and best regards,</div><div>Mauro.</div><div><br></div><div class="gmail_quote"><div dir="auto" class="gmail_attr">Il giorno lunedì 22 febbraio 2021 alle 11:44:24 UTC+1 fa...@gmail.com ha scritto:<br/></div><blockquote class="gmail_quote" style="margin: 0 0 0 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div>Dear Mauro,</div><div><br></div><div>This is consistent with my own observations of the scaling of xTB. Because of the increasing cost of communication more CPUs don't necesarily speed up the simulation.
I don't use more than 25 CPUs with xTB unless I have well above 1000 atoms.</div><div><br></div><div>Please note that the number of MPI ranks should be a square number. 25 CPUs are probably faster than 28 unless you are using k-points.<br></div><div><br></div><div>Cheers,</div><div>Fabian<br></div><br><div class="gmail_quote"><div dir="auto" class="gmail_attr">On Monday, 22 February 2021 at 11:10:11 UTC+1 <a href data-email-masked rel="nofollow">chu...@gmail.com</a> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div>Hi Mauro,</div><div><br></div><div>it will be easy to look into your scaling issue if you report time for each MD step. I am also doing MD with xTB.<br></div><div><br></div><div>Regards</div><div><div><div dir="ltr" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div>Manjusha<br></div></div></div></div></div></div><br></div></div><br><div class="gmail_quote"></div><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Mon, Feb 22, 2021 at 10:59 AM Mauro Sgroi <<a rel="nofollow">mauro...@gmail.com</a>> wrote:<br></div></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Dear all,<div>I'm testing the xTB code on a liquid electrolyte containing a Li ion.</div><div>I'm running MD on a cell containing 728 atoms.</div><div>I obtain a disappointing scaling with the number of cores. The following are times for 100 MD steps:</div><div><br></div><div><div>cores Time (s)</div><div>28 7818 </div><div>56 7364</div><div>84 6529</div><div>112 7493</div></div><div><br></div><div>My input file can be downloaded here: </div><div><br></div><div><a href="https://drive.google.com/file/d/1KvZz5x6FwgOP3dzH6fePghMQBineIlfE/view?usp=sharing" rel="nofollow" target="_blank" data-saferedirecturl="https://www.google.com/url?hl=it&q=https://drive.google.com/file/d/1KvZz5x6FwgOP3dzH6fePghMQBineIlfE/view?usp%3Dsharing&source=gmail&ust=1614077155408000&usg=AFQjCNEm9r9dlnCqyxUk46lUU0qvk5WnIQ">https://drive.google.com/file/d/1KvZz5x6FwgOP3dzH6fePghMQBineIlfE/view?usp=sharing</a></div><div><br></div><div>Is this the right behaviour to be expected? Or is there is something wrong in my compilation of the code or in the input file? </div><div>The HPC facility has a Infinband network protocol and a fast shared filesystem.</div><div><br></div><div>Thanks a lot in advance and best regards,</div><div>Mauro Sgroi.</div><div><br></div><div><br></div><div><br></div>
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