<div dir="ltr"><div>Hi, </div><div><br></div>I am not sure about your case but I have a similar problem when I updated to intel compiler and mkl 2019. Maybe I made something wrong during the installation but downgrade to 2018 version solved my problem.<div><br></div><div>Nam<br><br>On Monday, 28 October 2019 18:35:15 UTC+11, Ke Zhou wrote:<blockquote class="gmail_quote" style="margin: 0;margin-left: 0.8ex;border-left: 1px #ccc solid;padding-left: 1ex;"><div dir="ltr">Dear Developers,<div><br></div><div><div style="font-size:small">Now I am running <span>cp2k</span> 6.1 on our new cluster. </div><div style="font-size:small">The <b>memory usage for <span>cp2k</span> is increased with time </b>during running. Finally, it stops when the usage reach the upper bound. I also tried <span>cp2k</span> 5.1 and had same problem. </div><div style="font-size:small"><b>But I run it in our old cluster which is 2.5.1 version, it works well.</b></div><div style="font-size:small"><br></div><div style="font-size:small">However, I run one of the example in CP2K package, H2O-64.inp (path: ./test/QS/benchmark, bulk water), using both 6.1 and 5.1, it runs well.</div><div style="font-size:small"><br></div><div style="font-size:small">Can you help me?</div><div style="font-size:small">Is the problem from compile or the input file?</div><div style="font-size:small"><br></div><div style="font-size:small"><div>Best,</div><div>Ke  </div><div><br></div><div><br></div></div><div style="font-size:small"><br></div><div style="font-size:small">Input file:</div><div style="font-size:small">########## H2O-64.inp, from example file ##################</div><div><div><font size="2">&FORCE_EVAL</font></div><div><font size="2"> METHOD QS</font></div><div><font size="2"> &DFT</font></div><div><font size="2">  BASIS_SET_FILE_NAME GTH_BASIS_SETS</font></div><div><font size="2">  POTENTIAL_FILE_NAME POTENTIAL</font></div><div><font size="2">  &MGRID</font></div><div><font size="2">   CUTOFF 280</font></div><div><font size="2">   REL_CUTOFF 30</font></div><div><font size="2">  &END MGRID</font></div><div><font size="2">  &QS</font></div><div><font size="2">   EPS_DEFAULT 1.0E-12</font></div><div><font size="2">   WF_INTERPOLATION PS </font></div><div><font size="2">   EXTRAPOLATION_ORDER 3 </font></div><div><font size="2">  &END QS</font></div><div><font size="2">  &SCF</font></div><div><font size="2">   SCF_GUESS ATOMIC</font></div><div><font size="2">   &OT ON</font></div><div><font size="2">    MINIMIZER DIIS</font></div><div><font size="2">   &END OT</font></div><div><font size="2"><br></font></div><div><font size="2">   &PRINT</font></div><div><font size="2">    &RESTART OFF</font></div><div><font size="2">    &END</font></div><div><font size="2">   &END</font></div><div><font size="2"><br></font></div><div><font size="2">  # SCF_GUESS    RESTART</font></div><div><font size="2">  # EPS_SCF   1.0E-7</font></div><div><font size="2">  &END SCF</font></div><div><font size="2">  &XC</font></div><div><font size="2">   &XC_FUNCTIONAL Pade</font></div><div><font size="2">   &END XC_FUNCTIONAL</font></div><div><font size="2">  &END XC</font></div><div><font size="2"> &END DFT</font></div><div><font size="2"> &SUBSYS</font></div><div><font size="2">  &CELL</font></div><div><font size="2">   ABC 12.4138 12.4138 12.4138</font></div><div><font size="2">  &END CELL</font></div><div><font size="2"> # 64 H2O (TIP5P,1bar,300K) a = 12.4138</font></div><div><font size="2">  &COORD</font></div><div><font size="2">  O   12.235322    1.376642   10.869880</font></div><div><font size="2">  O    6.445390    3.706940    8.650794</font></div><div><font size="2">  O    0.085977    2.181322    8.276663</font></div><div><font size="2">  O   12.052554    2.671366    2.147199</font></div><div><font size="2">  O   12.250036    4.190930   12.092014</font></div><div><font size="2">  O    7.187422    0.959062    4.733469</font></div><div><font size="2">  O    8.346457    7.210040    4.667644</font></div><div><font size="2">  O   12.361546   11.527875    8.106887</font></div><div><font size="2">  O    3.299984    4.440816    9.193275</font></div><div><font size="2">  O    2.855829    3.759909    6.552815</font></div><div><font size="2">  O    1.392494    6.362753    0.586172</font></div><div><font size="2">  O    1.858645    8.694013    2.068738</font></div><div><font size="2">  O    3.770231   12.094519    8.652183</font></div><div><font size="2">  O    6.432508    3.669828    2.772418</font></div><div><font size="2">  O    1.998724    1.820217    4.876440</font></div><div><font size="2">  O    8.248581    2.404730    6.931303</font></div><div><font size="2">  O    5.753814    3.360029   12.461534</font></div><div><font size="2">  O   11.322212    5.649239    2.236798</font></div><div><font size="2">  O    4.277318    2.113956   10.590808</font></div><div><font size="2">  O    5.405015    3.349247    5.484702</font></div><div><font size="2">  O    6.493278   11.869958    0.684912</font></div><div><font size="2">  O    3.275250    2.346576    2.425241</font></div><div><font size="2">  O    7.981003    6.352512    7.507970</font></div><div><font size="2">  O    5.985990    6.512854   12.194648</font></div><div><font size="2">  O   10.636714   11.856872   12.209540</font></div><div><font size="2">  O    9.312283    3.670384    3.508594</font></div><div><font size="2">  O    1.106885    5.830301    6.638695</font></div><div><font size="2">  O    8.008007    3.326363   10.869818</font></div><div><font size="2">  O   12.403000    9.687405   11.761901</font></div><div><font size="2">  O    4.219782    7.085315    8.153470</font></div><div><font size="2">  O    3.781557    8.203821   11.563272</font></div><div><font size="2">  O   11.088898    4.532081    7.809475</font></div><div><font size="2">  O   10.387548    8.408890    1.017882</font></div><div><font size="2">  O    1.979016    6.418091   10.374159</font></div><div><font size="2">  O    4.660547    0.549666    5.617403</font></div><div><font size="2">  O    8.745880   12.256257    8.089383</font></div><div><font size="2">  O    2.662041   10.489890    0.092980</font></div><div><font size="2">  O    7.241661   10.471815    4.226946</font></div><div><font size="2">  O    2.276827    0.276647   10.810417</font></div><div><font size="2">  O    8.887733    0.946877    1.333885</font></div><div><font size="2">  O    1.943554    8.088552    7.567650</font></div><div><font size="2">  O    9.667942    8.056759    9.868847</font></div><div><font size="2">  O   10.905491    8.339638    6.484782</font></div><div><font size="2">  O    3.507733    4.862402    1.557439</font></div><div><font size="2">  O    8.010457    8.642846   12.055969</font></div><div><font size="2">  O    8.374446   10.035932    6.690309</font></div><div><font size="2">  O    5.635247    6.076875    5.563993</font></div><div><font size="2">  O   11.728434    1.601906    5.079475</font></div><div><font size="2">  O    9.771134    9.814114    3.548703</font></div><div><font size="2">  O    3.944355   10.563450    4.687536</font></div><div><font size="2">  O    0.890357    6.382287    4.065806</font></div><div><font size="2">  O    6.862447    6.425182    2.488202</font></div><div><font size="2">  O    3.813963    6.595122    3.762649</font></div><div><font size="2">  O    6.562448    8.295463    8.807182</font></div><div><font size="2">  O    9.809455    0.143325    3.886553</font></div><div><font size="2">  O    4.117074   11.661225    2.221679</font></div><div><font size="2">  O    5.295317    8.735561    2.763183</font></div><div><font size="2">  O    9.971999    5.379339    5.340378</font></div><div><font size="2">  O   12.254708    8.643874    3.957116</font></div><div><font size="2">  O    2.344274   10.761274    6.829162</font></div><div><font size="2">  O    7.013416    0.643488   10.518797</font></div><div><font size="2">  O    5.152349   10.233624   10.359388</font></div><div><font size="2">  O   11.184278    5.884064   10.298279</font></div><div><font size="2">  O   12.252335    8.974142    9.070831</font></div><div><font size="2">  H   12.415139    2.233125   11.257611</font></div><div><font size="2">  H   11.922476    1.573799    9.986994</font></div><div><font size="2">  H    5.608192    3.371543    8.971482</font></div><div><font size="2">  H    6.731226    3.060851    8.004962</font></div><div><font size="2">  H   -0.169205    1.565594    7.589645</font></div><div><font size="2">  H   -0.455440    2.954771    8.118939</font></div><div><font size="2">  H   12.125168    2.826463    1.205443</font></div><div><font size="2">  H   12.888828    2.969761    2.504745</font></div><div><font size="2">  H   11.553255    4.386613   11.465566</font></div><div><font size="2">  H   12.818281    4.960808   12.067151</font></div><div><font size="2">  H    7.049495    1.772344    4.247898</font></div><div><font size="2">  H    6.353019    0.798145    5.174047</font></div><div><font size="2">  H    7.781850    7.384852    5.420566</font></div><div><font size="2">  H    9.103203    6.754017    5.035898</font></div><div><font size="2">  H   12.771232   11.788645    8.931744</font></div><div><font size="2">  H   12.018035   10.650652    8.276334</font></div><div><font size="2">  H    3.557245    3.792529    9.848846</font></div><div><font size="2">  H    2.543844    4.884102    9.577958</font></div><div><font size="2">  H    2.320235    4.521250    6.329813</font></div><div><font size="2">  H    2.872128    3.749963    7.509824</font></div><div><font size="2">  H    1.209685    7.121391    1.140501</font></div><div><font size="2">  H    2.238885    6.038801    0.894245</font></div><div><font size="2">  H    2.763109    8.856353    2.336735</font></div><div><font size="2">  H    1.329379    9.047369    2.783755</font></div><div><font size="2">  H    4.315639   11.533388    9.203449</font></div><div><font size="2">  H    3.098742   12.433043    9.244412</font></div><div><font size="2">  H    5.987369    3.448974    3.590530</font></div><div><font size="2">  H    5.813096    3.419344    2.086985</font></div><div><font size="2">  H    1.057126    1.675344    4.969379</font></div><div><font size="2">  H    2.248496    2.292119    5.670892</font></div><div><font size="2">  H    8.508264    1.653337    7.464411</font></div><div><font size="2">  H    8.066015    2.034597    6.067646</font></div><div><font size="2">  H    5.197835    2.915542   11.821572</font></div><div><font size="2">  H    6.630900    3.329981   12.079371</font></div><div><font size="2">  H   10.788986    6.436672    2.127933</font></div><div><font size="2">  H   11.657923    5.463602    1.359832</font></div><div><font size="2">  H    3.544476    1.634958   10.977765</font></div><div><font size="2">  H    4.755770    1.455054   10.087655</font></div><div><font size="2">  H    4.465371    3.375459    5.665294</font></div><div><font size="2">  H    5.682663    4.264430    5.524498</font></div><div><font size="2">  H    6.174815   11.778676    1.582954</font></div><div><font size="2">  H    5.713640   12.089924    0.174999</font></div><div><font size="2">  H    3.476076    1.498708    2.028983</font></div><div><font size="2">  H    2.730229    2.134295    3.182949</font></div><div><font size="2">  H    7.119624    5.936450    7.474030</font></div><div><font size="2">  H    8.536492    5.799405    6.958665</font></div><div><font size="2">  H    5.909499    5.717477   11.667621</font></div><div><font size="2">  H    6.125402    6.196758   13.087330</font></div><div><font size="2">  H   11.203499   12.513536   11.804844</font></div><div><font size="2">  H   10.260930   12.300153   12.970145</font></div><div><font size="2">  H    9.985036    3.927685    2.878172</font></div><div><font size="2">  H    8.545584    3.468329    2.972331</font></div><div><font size="2">  H    1.399882    6.620092    7.093246</font></div><div><font size="2">  H    0.963561    6.112523    5.735345</font></div><div><font size="2">  H    8.067363    3.674002    9.979955</font></div><div><font size="2">  H    8.000737    2.375959   10.756190</font></div><div><font size="2">  H   11.821629   10.402510   12.020482</font></div><div><font size="2">  H   12.206854    8.983242   12.379892</font></div><div><font size="2">  H    3.461473    7.606485    7.889688</font></div><div><font size="2">  H    3.844478    6.304711    8.560946</font></div><div><font size="2">  H    3.179884    7.585614   11.148494</font></div><div><font size="2">  H    4.401957    7.652030   12.039573</font></div><div><font size="2">  H   11.573777    5.053211    7.169515</font></div><div><font size="2">  H   10.342076    4.186083    7.320831</font></div><div><font size="2">  H   10.065640    8.919194    1.760981</font></div><div><font size="2">  H    9.629585    8.322499    0.439729</font></div><div><font size="2">  H    1.396302    6.546079    9.625630</font></div><div><font size="2">  H    1.405516    6.479759   11.138049</font></div><div><font size="2">  H    4.024008    1.232518    5.405828</font></div><div><font size="2">  H    4.736858    0.579881    6.571077</font></div><div><font size="2">  H    9.452293   12.313381    8.732772</font></div><div><font size="2">  H    8.976559   11.502788    7.545965</font></div><div><font size="2">  H    1.834701   10.012311    0.153462</font></div><div><font size="2">  H    3.295197    9.836403   -0.204175</font></div><div><font size="2">  H    7.056724   11.401702    4.095264</font></div><div><font size="2">  H    6.499038   10.020287    3.825865</font></div><div><font size="2">  H    1.365541    0.487338   11.013887</font></div><div><font size="2">  H    2.501591   -0.428131   11.417871</font></div><div><font size="2">  H    8.644279    1.812362    1.005409</font></div><div><font size="2">  H    8.142674    0.388030    1.112955</font></div><div><font size="2">  H    1.272659    8.365063    8.191888</font></div><div><font size="2">  H    2.142485    8.877768    7.063867</font></div><div><font size="2">  H    8.961493    7.826192    9.265523</font></div><div><font size="2">  H    9.227102    8.487654   10.601118</font></div><div><font size="2">  H   10.150144    7.758934    6.392768</font></div><div><font size="2">  H   10.596082    9.187988    6.167290</font></div><div><font size="2">  H    3.463106    4.096188    2.129414</font></div><div><font size="2">  H    3.919461    4.539801    0.755791</font></div><div><font size="2">  H    7.418998    9.394959   12.028876</font></div><div><font size="2">  H    7.430413    7.883095   12.106546</font></div><div><font size="2">  H    7.972905   10.220334    5.841196</font></div><div><font size="2">  H    7.675111    9.631498    7.203725</font></div><div><font size="2">  H    5.332446    6.381336    6.419473</font></div><div><font size="2">  H    5.000025    6.434186    4.943466</font></div><div><font size="2">  H   11.575078    2.271167    4.412540</font></div><div><font size="2">  H   11.219802    0.847030    4.783357</font></div><div><font size="2">  H    8.865342    9.721516    3.843998</font></div><div><font size="2">  H   10.000732   10.719285    3.758898</font></div><div><font size="2">  H    3.186196   10.476397    5.265333</font></div><div><font size="2">  H    4.407331   11.335128    5.013723</font></div><div><font size="2">  H    0.558187    7.255936    3.859331</font></div><div><font size="2">  H    0.341672    5.789383    3.552346</font></div><div><font size="2">  H    7.459933    6.526049    3.229193</font></div><div><font size="2">  H    6.696228    5.483739    2.440372</font></div><div><font size="2">  H    3.864872    6.313007    2.849385</font></div><div><font size="2">  H    2.876419    6.621201    3.953862</font></div><div><font size="2">  H    5.631529    8.079145    8.753997</font></div><div><font size="2">  H    7.003296    7.568245    8.367822</font></div><div><font size="2">  H    9.615413    0.527902    3.031755</font></div><div><font size="2">  H    8.962985    0.109366    4.332162</font></div><div><font size="2">  H    3.825854   11.139182    1.474087</font></div><div><font size="2">  H    4.063988   11.063232    2.967211</font></div><div><font size="2">  H    5.784391    7.914558    2.708486</font></div><div><font size="2">  H    4.780461    8.655167    3.566110</font></div><div><font size="2">  H   10.880659    5.444664    5.046607</font></div><div><font size="2">  H    9.593331    4.687991    4.797350</font></div><div><font size="2">  H   11.562317    8.960134    3.376765</font></div><div><font size="2">  H   11.926084    8.816948    4.839320</font></div><div><font size="2">  H    2.856874   11.297981    7.433660</font></div><div><font size="2">  H    1.492332   11.195517    6.786033</font></div><div><font size="2">  H    7.145820    0.090200    9.749009</font></div><div><font size="2">  H    7.227275    0.077690   11.260665</font></div><div><font size="2">  H    4.662021    9.538430   10.798155</font></div><div><font size="2">  H    5.994537    9.833472   10.142985</font></div><div><font size="2">  H   10.544299    6.595857   10.301445</font></div><div><font size="2">  H   11.281750    5.653082    9.374494</font></div><div><font size="2">  H   12.103020    8.841164   10.006916</font></div><div><font size="2">  H   11.491592    8.576221    8.647557</font></div><div><font size="2">  &END COORD</font></div><div><font size="2">  &KIND H</font></div><div><font size="2">   BASIS_SET TZV2P-GTH</font></div><div><font size="2">   POTENTIAL GTH-PADE-q1</font></div><div><font size="2">  &END KIND</font></div><div><font size="2">  &KIND O</font></div><div><font size="2">   BASIS_SET TZV2P-GTH</font></div><div><font size="2">   POTENTIAL GTH-PADE-q6</font></div><div><font size="2">  &END KIND</font></div><div><font size="2"> &END SUBSYS</font></div><div><font size="2">&END FORCE_EVAL</font></div><div><font size="2">&GLOBAL</font></div><div><font size="2"> PROJECT H2O-64</font></div><div><font size="2"> RUN_TYPE MD</font></div><div><font size="2"> PRINT_LEVEL LOW</font></div><div><font size="2"><br></font></div><div><font size="2"> &TIMINGS</font></div><div><font size="2">   THRESHOLD 0.000001</font></div><div><font size="2"> &END</font></div><div><font size="2"><br></font></div><div><font size="2">&END GLOBAL</font></div><div><font size="2">&MOTION</font></div><div><font size="2"> &MD</font></div><div><font size="2">  ENSEMBLE NVE</font></div><div><font size="2">  STEPS 10000000</font></div><div><font size="2">  TIMESTEP 0.5</font></div><div><font size="2">  TEMPERATURE 300.0</font></div><div><font size="2"> &END MD</font></div><div><font size="2">&END MOTION</font></div></div><div style="font-size:small"><div>########## H2O-64.inp, from example file ##################</div><div style="font-size:13px"></div></div><div style="font-size:small"><br></div><div style="font-size:small"><br></div><div style="font-size:small"><div>########## my input file, the memory usage for <span>cp2k</span> is increased with time<b> </b>##################</div><div><div>########## the system is bulk water + one Cl ion                      ##################</div><div><br></div></div><div style="font-size:13px"></div></div><div style="font-size:small"><br></div><div><div><font size="2">@SET SYSTEM Bulk</font></div><div><font size="2"><br></font></div><div><font size="2">&GLOBAL</font></div><div><font size="2"> PROJECT ${SYSTEM}</font></div><div><font size="2"> RUN_TYPE MD       </font></div><div><font size="2"> PRINT_LEVEL low</font></div><div><font size="2"> EXTENDED_FFT_LENGTHS T</font></div><div><font size="2">&END GLOBAL</font></div><div><font size="2"><br></font></div><div><font size="2">&FORCE_EVAL</font></div><div><font size="2"> ! the electronic structure part of CP2K is named Quickstep</font></div><div><font size="2"> METHOD Quickstep</font></div><div><font size="2"> STRESS_TENSOR ANALYTICAL</font></div><div><font size="2"> &DFT</font></div><div><font size="2">  ! basis sets and pseudopotential files can be found in cp2k/data</font></div><div><font size="2">  BASIS_SET_FILE_NAME   ./GTH_BASIS_SETS   </font></div><div><font size="2">  POTENTIAL_FILE_NAME   ./POTENTIAL </font></div><div><font size="2">  WFN_RESTART_FILE_NAME ./${SYSTEM}-RESTART.wfn</font></div><div><font size="2"><br></font></div><div><font size="2">  ! Charge and multiplicity</font></div><div><font size="2">  CHARGE -1</font></div><div><font size="2">#   LSD </font></div><div><font size="2">#  MULTIPLICITY 1</font></div><div><font size="2">#   <span style="white-space:pre"> </span>Two times the total spin plus one. Specify 3 for a triplet, 4 for a quartet, and so on. </font></div><div><font size="2">#<span style="white-space:pre"> </span>Default is 1 (singlet) for an even number and 2 (doublet) for an odd number of electrons.</font></div><div><font size="2">#</font></div><div><font size="2"><br></font></div><div><font size="2">  &MGRID</font></div><div><font size="2">    ! PW cutoff ... depends on the element (basis) too small cutoffs lead to the eggbox effect.</font></div><div><font size="2">    ! certain calculations (e.g. geometry optimization, vibrational frequencies,</font></div><div><font size="2">    ! NPT and cell optimizations, need higher cutoffs)</font></div><div><font size="2">    CUTOFF [Ry] 500 </font></div><div><font size="2">    ##REL_CUTOFF [Ry] 50</font></div><div><font size="2">  &END</font></div><div><font size="2"><br></font></div><div><font size="2">  &QS</font></div><div><font size="2">    ! use the GPW method (i.e. pseudopotential based calculations with the Gaussian and Plane Waves scheme).</font></div><div><font size="2">    METHOD GPW </font></div><div><font size="2">    ! default threshold for numerics ~ roughly numerical accuracy of the total energy per electron,</font></div><div><font size="2">    ! sets reasonable values for all other thresholds.</font></div><div><font size="2">    EPS_DEFAULT 1.0E-10 </font></div><div><font size="2">    ! used for MD, the method used to generate the initial guess.</font></div><div><font size="2">    MAP_CONSISTENT TRUE</font></div><div><font size="2">    EXTRAPOLATION ASPC </font></div><div><font size="2">    EXTRAPOLATION_ORDER 4</font></div><div><font size="2">  &END</font></div><div><font size="2"><br></font></div><div><font size="2">  &POISSON</font></div><div><font size="2">    PERIODIC XYZ ! the default, gas phase systems should have 'NONE' and a wavelet solver</font></div><div><font size="2">  &END</font></div><div><font size="2"><br></font></div><div><font size="2">  &PRINT</font></div><div><font size="2">   ! output atomic charge</font></div><div><font size="2">   &MULLIKEN </font></div><div><font size="2">    FILENAME ${SYSTEM}</font></div><div><font size="2">    &EACH</font></div><div><font size="2"> <span style="white-space:pre"> </span> MD 10</font></div><div><font size="2">    &END EACH</font></div><div><font size="2">   &END MULLIKEN</font></div><div><font size="2">   ! output others </font></div><div><font size="2">  &END</font></div><div><font size="2"><br></font></div><div><font size="2">  ! use the OT METHOD for robust and efficient SCF, suitable for all non-metallic systems.</font></div><div><font size="2">  &SCF                </font></div><div><font size="2">   SCF_GUESS RESTART #ATOMIC ! can be used to RESTART an interrupted calculation</font></div><div><font size="2">   MAX_SCF 1000</font></div><div><font size="2">   EPS_SCF 1.0E-7 #1.0E-7 ! accuracy of the SCF procedure typically 1.0E-6 - 1.0E-7</font></div><div><font size="2">   &OUTER_SCF ! repeat the inner SCF cycle 10 times</font></div><div><font size="2">    MAX_SCF 10</font></div><div><font size="2">    EPS_SCF 1.0E-7 #1.0E-7 ! must match the above</font></div><div><font size="2">   &END</font></div><div><font size="2">####### for OT #######</font></div><div><font size="2">   CHOLESKY OFF</font></div><div><font size="2">   &OT</font></div><div><font size="2">    #CHOLESKY OFF</font></div><div><font size="2">    ! an accurate preconditioner suitable also for larger systems</font></div><div><font size="2">    PRECONDITIONER FULL_ALL</font></div><div><font size="2">    ! the most robust choice (DIIS might sometimes be faster, but not as stable).</font></div><div><font size="2">    MINIMIZER DIIS ## CG</font></div><div><font size="2">    N_DIIS 5</font></div><div><font size="2"><span style="white-space:pre"> </span>ENERGY_GAP 1.0E-5</font></div><div><font size="2">   &END OT</font></div><div><font size="2"><br></font></div><div><font size="2">###### for diagonalization #######</font></div><div><font size="2">#   ADDED_MOS 100</font></div><div><font size="2">#   CHOLESKY OFF #INVERSE</font></div><div><font size="2">#   &SMEAR ON</font></div><div><font size="2">#    METHOD FERMI_DIRAC</font></div><div><font size="2">#    ELECTRONIC_TEMPERATURE [K] 300</font></div><div><font size="2">#   &END SMEAR</font></div><div><font size="2">#   &DIAGONALIZATION</font></div><div><font size="2">#    ALGORITHM STANDARD</font></div><div><font size="2">#    EPS_ADAPT 0.01</font></div><div><font size="2">#   &END DIAGONALIZATION</font></div><div><font size="2"><br></font></div><div><font size="2">   &MIXING</font></div><div><font size="2">    METHOD BROYDEN_MIXING</font></div><div><font size="2">    ALPHA 0.2</font></div><div><font size="2">    BETA 1.5</font></div><div><font size="2">    NBROYDEN 8</font></div><div><font size="2">   &END MIXING</font></div><div><font size="2"><br></font></div><div><font size="2">  &END SCF</font></div><div><font size="2"><br></font></div><div><font size="2">  ! specify the exchange and correlation treatment</font></div><div><font size="2">  &XC</font></div><div><font size="2">   ! use a PBE functional </font></div><div><font size="2">   &XC_FUNCTIONAL PBE   </font></div><div><font size="2">     &PBE</font></div><div><font size="2">      PARAMETRIZATION revPBE</font></div><div><font size="2">      #SCALE_C 0.0</font></div><div><font size="2">     &END PBE</font></div><div><font size="2">     &VWN</font></div><div><font size="2">     &END VWN</font></div><div><font size="2">   &END XC_FUNCTIONAL</font></div><div><font size="2">   ! adding Grimme's D3 correction (by default without C9 terms) </font></div><div><font size="2">   &VDW_POTENTIAL</font></div><div><font size="2">     POTENTIAL_TYPE PAIR_POTENTIAL </font></div><div><font size="2">     &PAIR_POTENTIAL</font></div><div><font size="2">      TYPE DFTD3</font></div><div><font size="2">      #CALCULATE_C9_TERM T</font></div><div><font size="2">      #REFEREBCE_C9_TERM T</font></div><div><font size="2">      #LONG_RANGE_CORRECTION T</font></div><div><font size="2"><span style="white-space:pre"> </span>  PARAMETER_FILE_NAME dftd3.dat</font></div><div><font size="2">      REFERENCE_FUNCTIONAL revPBE</font></div><div><font size="2">      R_CUTOFF [angstrom] 11</font></div><div><font size="2">     &END</font></div><div><font size="2">   &END VDW_POTENTIAL</font></div><div><font size="2">  &END XC</font></div><div><font size="2"> &END DFT</font></div><div><font size="2"> </font></div><div><font size="2"> ! description of the system</font></div><div><font size="2"> &SUBSYS</font></div><div><font size="2">  &CELL </font></div><div><font size="2">   ! unit cells that are orthorhombic are more efficient with CP2K</font></div><div><font size="2">   ABC [angstrom] 12.42 12.42 12.42</font></div><div><font size="2">  &END CELL</font></div><div><font size="2"><br></font></div><div><font size="2">  ! atom coordinates can be in the &COORD section,</font></div><div><font size="2">  ! or provided as an external file.</font></div><div><font size="2">#  &TOPOLOGY</font></div><div><font size="2">#   COORD_FILE_NAME Na.xyz</font></div><div><font size="2">#   COORD_FILE_FORMAT XYZ</font></div><div><font size="2">#  &END</font></div><div><font size="2"><br></font></div><div><font size="2">  ! MOLOPT basis sets are fairly costly,</font></div><div><font size="2">  ! but in the 'DZVP-MOLOPT-SR-GTH' available for all elements</font></div><div><font size="2">  ! their contracted nature makes them suitable</font></div><div><font size="2">  ! for condensed and gas phase systems alike.</font></div><div><font size="2"><br></font></div><div><font size="2">  &KIND C</font></div><div><font size="2">   BASIS_SET DZVP-MOLOPT-SR-GTH ## TZV2P-GTH </font></div><div><font size="2">   POTENTIAL GTH-PBE</font></div><div><font size="2">  &END KIND</font></div><div><font size="2">  &KIND O</font></div><div><font size="2">   BASIS_SET DZVP-MOLOPT-SR-GTH ## TZV2P-GTH ###DZVP-GTH-PBE</font></div><div><font size="2">   POTENTIAL GTH-PBE-q6</font></div><div><font size="2">  &END KIND</font></div><div><font size="2">  &KIND H</font></div><div><font size="2">   BASIS_SET DZVP-MOLOPT-SR-GTH ## TZV2P-GTH ##DZVP-GTH-PBE</font></div><div><font size="2">   POTENTIAL GTH-PBE-q1</font></div><div><font size="2">  &END KIND</font></div><div><font size="2">  &KIND Cl</font></div><div><font size="2">   BASIS_SET DZVP-MOLOPT-SR-GTH ## TZV2P-GTH ##DZVP-GTH-PBE</font></div><div><font size="2">   POTENTIAL GTH-PBE-q7</font></div><div><font size="2">  &END KIND</font></div><div><font size="2"><br></font></div><div><font size="2"> &END SUBSYS</font></div><div><font size="2">&END FORCE_EVAL</font></div><div><font size="2"><br></font></div><div><font size="2">! how to propagate the system, selection via RUN_TYPE in the &GLOBAL section</font></div><div><font size="2">&MOTION</font></div><div><font size="2"> &MD</font></div><div><font size="2">  ENSEMBLE NVT ! sampling the canonical ensemble, accurate properties might need NVE</font></div><div><font size="2">  TEMPERATURE [K] 330</font></div><div><font size="2">  TIMESTEP [fs] 0.5</font></div><div><font size="2">  STEPS 40000 # 20 ps </font></div><div><font size="2">#  COMVEL_TOL 0.00001</font></div><div><font size="2"><br></font></div><div><font size="2">   &THERMOSTAT</font></div><div><font size="2">  #  REGION MOLECULE</font></div><div><font size="2">  #  REGION GLOBAL</font></div><div><font size="2">  #  REGION MASSIVE</font></div><div><font size="2">    TYPE NOSE</font></div><div><font size="2">    &NOSE</font></div><div><font size="2">     LENGTH 4 # CPMD</font></div><div><font size="2">     YOSHIDA 9 # 3 5 7 9 15 25 125#</font></div><div><font size="2">     TIMECON 100</font></div><div><font size="2">     MTS 2</font></div><div><font size="2">    &END NOSE</font></div><div><font size="2">  &END THERMOSTAT</font></div><div><font size="2"><br></font></div><div><font size="2"> &END MD</font></div><div><font size="2"># &CONSTRAINT</font></div><div><font size="2">#  &FIXED_ATOMS</font></div><div><font size="2">#   COMPONENTS_TO_FIX XYZ</font></div><div><font size="2">#   LIST 1..120</font></div><div><font size="2">#  &END FIXED_ATOMS</font></div><div><font size="2"># &END CONSTRAINT</font></div><div><font size="2"><br></font></div><div><font size="2"><br></font></div><div><font size="2"> &PRINT</font></div><div><font size="2">  &TRAJECTORY</font></div><div><font size="2">   &EACH</font></div><div><font size="2">    MD 1</font></div><div><font size="2">   &END EACH</font></div><div><font size="2">   FORMAT XYZ</font></div><div><font size="2">  &END TRAJECTORY</font></div><div><font size="2">  &VELOCITIES</font></div><div><font size="2">   &EACH</font></div><div><font size="2">    MD 1</font></div><div><font size="2">   &END EACH</font></div><div><font size="2">   FORMAT XYZ</font></div><div><font size="2">  &END VELOCITIES</font></div><div><font size="2">  &FORCES</font></div><div><font size="2">   &EACH</font></div><div><font size="2">    MD 5</font></div><div><font size="2">   &END EACH</font></div><div><font size="2">  &END FORCES</font></div><div><font size="2">  &RESTART</font></div><div><font size="2">   &EACH</font></div><div><font size="2">    MD 20</font></div><div><font size="2">   &END</font></div><div><font size="2">  &END</font></div><div><font size="2"><br></font></div><div><font size="2"><br></font></div><div><font size="2">  &MIXED_ENERGIES</font></div><div><font size="2">   &EACH</font></div><div><font size="2">   MD 5</font></div><div><font size="2">   &END EACH</font></div><div><font size="2">  &END MIXED_ENERGIES</font></div><div><font size="2"><br></font></div><div><font size="2"><br></font></div><div><font size="2">   </font></div><div><font size="2">  &CELL</font></div><div><font size="2">   &EACH</font></div><div><font size="2">   MD 1</font></div><div><font size="2">   &END EACH</font></div><div><font size="2">  &END CELL</font></div><div><font size="2"><br></font></div><div><font size="2">  &STRESS</font></div><div><font size="2">  &EACH </font></div><div><font size="2">  MD 10</font></div><div><font size="2">  &END EACH</font></div><div><font size="2">  &END STRESS</font></div><div><font size="2"><br></font></div><div><font size="2">  &RESTART_HISTORY</font></div><div><font size="2">   &EACH</font></div><div><font size="2">    MD 50</font></div><div><font size="2">   &END EACH</font></div><div><font size="2">  &END RESTART_HISTORY</font></div><div><font size="2"><br></font></div><div><font size="2"> &END PRINT</font></div><div><font size="2">&END MOTION</font></div><div><font size="2"><br></font></div><div><font size="2">&EXT_RESTART</font></div><div><font size="2"> RESTART_FILE_NAME ./Bulk-1.restart</font></div><div><font size="2"> RESTART_POS</font></div><div><font size="2"> RESTART_VEL</font></div><div><font size="2"> RESTART_CELL</font></div><div><font size="2"> RESTART_CONSTRAINT F</font></div><div><font size="2">&END EXT_RESTART</font></div></div><div style="font-size:small"><div><div>########## my input file,  the memory usage for <span>cp2k</span> is increased with time<b> </b>##################</div><div style="font-size:13px"></div></div><div><br></div></div><div style="font-size:small"><br></div></div></div></blockquote></div></div>