<div dir="ltr">Hi,<div><br></div><div>I don't have any issues either. Vasantha, I'm not familiar with the way you're loading the XYZ file. The output from VMD suggests you're reading it from a plugin, try loading the XYZ file with VMD directly (right click the xyz file, Open With -> VMD).</div><div><br></div><div><div style="background-color:rgb(250,250,250);border-color:rgb(187,187,187);border-style:solid;border-width:1px"><code><div><div>Info) Dynamically loaded 75 plugins in directory:</div><div>Info) C:/Program Files (x86)/University of Illinois/VMD/plugins/WIN32/<wbr>molfile</div><div>Info) File loading in progress, please wait.</div><div>Info) Using plugin xyz for structure file C:\Users\koschey\Downloads\<wbr>H2O-pos-1.xyz</div><div>Info) Using plugin xyz for coordinates from file C:\Users\koschey\Downloads\<wbr>H2O-pos-1.xyz</div><div>Info) Determining bond structure from distance search ...</div><div>Info) Finished with coordinate file C:\Users\koschey\Downloads\<wbr>H2O-pos-1.xyz.</div><div>Info) Analyzing structure ...</div><div>Info) Atoms: 3</div><div>Info) Bonds: 2</div><div>Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0</div><div>Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0</div><div>Info) Residues: 1</div><div>Info) Waters: 0</div><div>Info) Segments: 1</div><div>Info) Fragments: 1 Protein: 0 Nucleic: 0</div><div>vmd ></div></div></code></div></div><div><br></div><div>-T</div><div><br><br>On Saturday, October 5, 2019 at 10:19:57 AM UTC-4, Nikhil Maroli wrote:<blockquote class="gmail_quote" style="margin:0;margin-left:0.8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Problem is with your VMD, the xyz file is working fine</div><br><div class="gmail_quote"><div dir="ltr">On Sat, Oct 5, 2019 at 6:35 PM vasanth kumar <<a rel="nofollow">va...@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr">Hi Travis<div><br></div><div>Thank you for reply.</div><div><br></div><div>When I opened .xyz file, No molecule is seen. Pl check attached file and attaching .xyz file also<br><div><br></div></div></div><br><div class="gmail_quote"><div dir="ltr">On Sat, 5 Oct 2019 at 18:22, Travis <<a rel="nofollow">po...@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi,<br>
<br>
All dumped xyz files are in standard XMOL format and so are directly viewable in VMD. You need to load the <a href="http://foo-pos-1.xyz" rel="nofollow" target="_blank">foo-pos-1.xyz</a> file to view the trajectory, not your output/log file.<br>
<br>
-T<br>
<br>
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</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr"><div dir="ltr"><div>With Regards<br><br></div><div>Dr. V. Vasantha Kumar<br></div><div>Assoc. Prof. of Physics<br></div><div>Vignan Institute of Technology and Science<br></div><div>Hyderabad.<br></div><div>Mob:9959363113<br></div></div></div>
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</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr"><div dir="ltr"><div><div dir="ltr"><div>Regards,</div>Nikhil Maroli<div><br></div></div></div></div></div>
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